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Description : conjugative coupling factor TraD, PFGI-1 class [Ensembl]. TraM recognition site of TraD and TraG [Interproscan].
Gene families : OG_02_0003005 (OrthoFinder) Phylogenetic Tree(s): OG0003005_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: CRN67074 | |
| Cluster | HCCA: Cluster_29 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| CRN76448 | No alias | conjugative coupling factor TraD, PFGI-1 class... | 0.26 | OrthoFinder | |
| CRN93751 | No alias | conjugative coupling factor TraD, PFGI-1 class... | 0.26 | OrthoFinder | |
| EDJ90762 | CGSHi22421_00320 | hypothetical protein [Ensembl]. TraM recognition site of... | 0.14 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| BP | GO:0006305 | DNA alkylation | IEP | Enrichment |
| BP | GO:0006306 | DNA methylation | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| MF | GO:0009007 | site-specific DNA-methyltransferase (adenine-specific) activity | IEP | Enrichment |
| MF | GO:0009008 | DNA-methyltransferase activity | IEP | Enrichment |
| BP | GO:0009297 | pilus assembly | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| BP | GO:0030030 | cell projection organization | IEP | Enrichment |
| BP | GO:0030031 | cell projection assembly | IEP | Enrichment |
| BP | GO:0032775 | DNA methylation on adenine | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0043711 | pilus organization | IEP | Enrichment |
| BP | GO:0044728 | DNA methylation or demethylation | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032689 | TraG-D_C | 536 | 662 |
| Locus_tag | PAERUG_E11_London_26_VIM_2_06_13_00178 |