CRO11818 (benM_2)

Aliases : benM_2

Description : Ben and cat operon transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRO11818
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AAC75050	nac, b1988	nitrogen assimilation regulon transcriptional regulator;...	0.03	OrthoFinder
AAC76609	yiaU, b3585	putative DNA-binding transcriptional regulator...	0.03	OrthoFinder
AAL23094	STM4270	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AGT23946	N559_2239	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.03	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005886	plasma membrane	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0008198	ferrous iron binding	IEP	Enrichment
BP	GO:0008643	carbohydrate transport	IEP	Enrichment
MF	GO:0015267	channel activity	IEP	Enrichment
MF	GO:0015288	porin activity	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0022803	passive transmembrane transporter activity	IEP	Enrichment
MF	GO:0022829	wide pore channel activity	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	87	291
IPR000847	Tscrpt_reg_HTH_LysR	3	62

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_01550

CRO11818 (benM_2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation