CRO12745 (rpoS)


Aliases : rpoS

Description : RNA polymerase sigma factor RpoS [Ensembl]. Sigma-70 factor, Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRO12745
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
CCP45508 sigB, Rv2710 RNA polymerase sigma factor SigB [Ensembl]. Sigma-70... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001897 cytolysis by symbiont of host cells IEP Enrichment
BP GO:0001906 cell killing IEP Enrichment
BP GO:0001907 killing by symbiont of host cells IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0009061 anaerobic respiration IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
BP GO:0019835 cytolysis IEP Enrichment
BP GO:0019836 hemolysis by symbiont of host erythrocytes IEP Enrichment
BP GO:0031640 killing of cells of other organism IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043546 molybdopterin cofactor binding IEP Enrichment
BP GO:0044179 hemolysis in other organism IEP Enrichment
BP GO:0044403 biological process involved in symbiotic interaction IEP Enrichment
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0051701 biological process involved in interaction with host IEP Enrichment
BP GO:0051715 cytolysis in other organism IEP Enrichment
BP GO:0051801 cytolysis in other organism involved in symbiotic interaction IEP Enrichment
BP GO:0051883 killing of cells in other organism involved in symbiotic interaction IEP Enrichment
BP GO:0052331 hemolysis in other organism involved in symbiotic interaction IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR009042 RNA_pol_sigma70_r1_2 61 93
IPR007627 RNA_pol_sigma70_r2 99 168
IPR007624 RNA_pol_sigma70_r3 179 253
IPR007630 RNA_pol_sigma70_r4 267 320