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  5. CRO37348

CRO37348 (benM_3)


Aliases : benM_3

Description : Ben and cat operon transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: CRO37348
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC75590 hcaR, b2537 hca operon transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AAL21105 STM2201, yeiE putative LysR family transcriptional regulator... 0.03 OrthoFinder
AGT23181 N559_1423 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT23255 N559_1502 putative LysR-family transcriptional regulator... 0.03 OrthoFinder
AGT23273 N559_1520, CynR DNA-binding transcriptional regulator CynR [Ensembl].... 0.03 OrthoFinder
AGT23403 N559_1659 putative DNA-binding transcriptional regulator... 0.03 OrthoFinder
AGT23946 N559_2239 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT24668 N559_3005, CysB transcriptional regulator CysB [Ensembl]. LysR substrate... 0.06 OrthoFinder
AGT24793 N559_3132 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT26415 N559_4829 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT26606 N559_5029, OxyR DNA-binding transcriptional regulator OxyR [Ensembl].... 0.04 OrthoFinder
AGT26618 N559_5041 putative LysR-family transcriptional regulator... 0.03 OrthoFinder
CRN91471 yofA_1 HTH-type transcriptional regulator YofA [Ensembl]. LysR... 0.09 OrthoFinder
CRO80200 cynR_3 Cyn operon transcriptional activator [Ensembl]. LysR... 0.08 OrthoFinder
CRO97148 gltC_4 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.05 OrthoFinder
CRP00540 cysL_3 CysJI operon transcriptional activator [Ensembl]. LysR... 0.11 OrthoFinder
CRP03013 gltC_5 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 4 63
IPR005119 LysR_subst-bd 88 293
Locus_tag PAERUG_E11_London_26_VIM_2_06_13_02237