CRO71932 (intS_3)

Aliases : intS_3

Description : Putative prophage CPS-53 integrase [Ensembl]. Arm DNA-binding domain, Phage integrase family [Interproscan].

Gene families : OG_02_0000238 (OrthoFinder) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRO71932
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method	Actions
CRN77128	No alias	hypothetical protein [Ensembl].	0.08	OrthoFinder
CRP66016	intS_5	Putative prophage CPS-53 integrase [Ensembl]. Arm...	0.22	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000746	conjugation	IEP	Enrichment
BP	GO:0009291	unidirectional conjugation	IEP	Enrichment
BP	GO:0030255	protein secretion by the type IV secretion system	IEP	Enrichment
BP	GO:0044097	secretion by the type IV secretion system	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR004107	Integrase_SAM-like_N	99	147
IPR025166	Integrase_DNA_bind_dom	2	88
IPR002104	Integrase_catalytic	204	375

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_03247