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CRP40889 (ccmF)


Aliases : ccmF

Description : Cytochrome c-type biogenesis protein CcmF [Ensembl]. Cytochrome C assembly protein, Cytochrome c-type biogenesis protein CcmF C-terminal [Interproscan].


Gene families : OG_02_0000633 (OrthoFinder) Phylogenetic Tree(s): OG0000633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRP40889
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AAC75256 ccmF, b2196 heme lyase, CcmF subunit [Ensembl]. Cytochrome C... 0.08 OrthoFinder
AAD13457 nrfE, b4074 heme lyase (NrfEFG) for insertion of heme into c552,... 0.03 OrthoFinder
AAL21151 STM2249, ccmF cytochrome c-type biogenesis protein [Ensembl].... 0.05 OrthoFinder
AAL22673 STM3814, ccmF cytochrome c-type biogenesis protein [Ensembl].... 0.05 OrthoFinder
AGT23927 N559_2215, CcmF cytochrome C biogenesis protein CcmF [Ensembl]. 0.04 OrthoFinder
AHY40220 CJ8421_05030 Putative cytochrome C-type biogenesis protein [Ensembl].... 0.04 OrthoFinder
CBI65983 ycf5, HPB8_426 bifunctional cytochrome c biogenesis protein [Ensembl].... 0.03 OrthoFinder
EDJ91889 CGSHi22421_09038 cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.03 OrthoFinder
KNA59634 VCV51_031376, CcmF cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0017004 cytochrome complex assembly IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
BP GO:0006826 iron ion transport IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
MF GO:0015232 heme transmembrane transporter activity IEP Enrichment
BP GO:0015886 heme transport IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901678 iron coordination entity transport IEP Enrichment
InterPro domains Description Start Stop
IPR032523 CcmF_C 316 636
IPR002541 Cyt_c_assembly 89 296
Locus_tag PAERUG_E11_London_26_VIM_2_06_13_05307