CRP53621 (dmlR_30)

Aliases : dmlR_30

Description : D-malate degradation protein R [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP53621

Target	Alias	Description	ECC score	Gene Family Method
AAC73313	yafC, b0208	LysR family putative transcriptional regulator...	0.04	OrthoFinder
AAL22236	STM3367, yhcS	putative LysR family transcriptional regulator...	0.06	OrthoFinder
AGT22104	N559_0282	putative LysR-family transcriptional regulator...	0.01	OrthoFinder
AGT22561	N559_0770	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT22715	N559_0927	LysR family transcriptional regulator protein [Ensembl]....	0.04	OrthoFinder
AGT22904	N559_1134	putative LysR-family transcriptional regulator...	0.01	OrthoFinder
AGT24568	N559_2901	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT24770	N559_3108	putative LysR-family transcriptional regulator...	0.02	OrthoFinder
AGT24866	N559_3206	LysR substrate binding domain protein [Ensembl]. LysR...	0.03	OrthoFinder
AGT24894	N559_3234	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT24929	N559_3271	putative LysR-family transcriptional regulator...	0.01	OrthoFinder
AGT26014	N559_4407	putative HTH-type transcriptional regulator [Ensembl]....	0.03	OrthoFinder
AKP14845	dmlR_2, WX61_00778	HTH-type transcriptional regulator DmlR [Ensembl]. LysR...	0.01	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.12	OrthoFinder
CRO43057	dmlR_15	D-malate degradation protein R [Ensembl]. LysR substrate...	0.08	OrthoFinder
CRP68785	dmlR_33	D-malate degradation protein R [Ensembl]. LysR substrate...	0.01	OrthoFinder
EDJ90238	CGSHi22421_05102	lysR-family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
EDJ90555	CGSHi22421_03258	DNA topoisomerase I [Ensembl]. LysR substrate binding...	0.01	OrthoFinder
KNA55708	VCV51_031016	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59855	VCV51_032266	LysR substrate binding domain-containing protein...	0.02	OrthoFinder
KNA59858	VCV51_032269	LysR substrate binding domain-containing protein...	0.01	OrthoFinder
KNA59999	VCV51_032411	LysR substrate binding domain-containing protein...	0.02	OrthoFinder
KNA60706	VCV51_032145	LysR substrate binding domain-containing protein...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	89	291
IPR000847	Tscrpt_reg_HTH_LysR	3	62

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_05687

CRP53621 (dmlR_30)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation