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Aliases : rluF
Description : Ribosomal large subunit pseudouridine synthase F [Ensembl]. S4 domain [Interproscan].
Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: CRP79377 | |
| Cluster | HCCA: Cluster_52 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AAL21125 | STM2222, rsuA | 16S rRNA pseudouridylate 516 synthase [Ensembl]. S4... | 0.03 | OrthoFinder | |
| EDJ90671 | CGSHi22421_04158 | predicted methyltransferase [Ensembl]. S4 domain, RNA... | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | Enrichment |
| BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006743 | ubiquinone metabolic process | IEP | Enrichment |
| BP | GO:0006744 | ubiquinone biosynthetic process | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| MF | GO:0008813 | chorismate lyase activity | IEP | Enrichment |
| BP | GO:0009112 | nucleobase metabolic process | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016829 | lyase activity | IEP | Enrichment |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Enrichment |
| MF | GO:0016833 | oxo-acid-lyase activity | IEP | Enrichment |
| BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0042180 | cellular ketone metabolic process | IEP | Enrichment |
| BP | GO:0042181 | ketone biosynthetic process | IEP | Enrichment |
| BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | Enrichment |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901661 | quinone metabolic process | IEP | Enrichment |
| BP | GO:1901663 | quinone biosynthetic process | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002942 | S4_RNA-bd | 6 | 45 |
| Locus_tag | PAERUG_E11_London_26_VIM_2_06_13_06457 |