KNA49512 (VCV51_030313)

Aliases : VCV51_030313

Description : LysR substrate binding domain-containing protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA49512
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
AAC75462	yfeR, b2409	transcriptional regulator of yefH [Ensembl]. LysR...	0.04	OrthoFinder
AEA94108	OG1RF_11421	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23721	N559_1994	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AKI49729	gltC, L2625_01870	transcriptional activator of the glutamate synthase...	0.03	OrthoFinder
CPC44234	lysR, ERS093114_00453	LysR family regulatory protein [Ensembl]. LysR substrate...	0.02	OrthoFinder
CPC63513	cidR, ERS093114_00910	LysR family regulatory protein CidR [Ensembl]. LysR...	0.03	OrthoFinder
CPD33378	gltC, ERS093114_02589	Transcription activator of glutamate synthase operon...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0008238	exopeptidase activity	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0032259	methylation	IEP	Enrichment
MF	GO:0051536	iron-sulfur cluster binding	IEP	Enrichment
MF	GO:0051540	metal cluster binding	IEP	Enrichment
MF	GO:0070008	serine-type exopeptidase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	88	292
IPR000847	Tscrpt_reg_HTH_LysR	6	63

External Links

No external refs found!

KNA49512 (VCV51_030313)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation