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  5. KNA51808

KNA51808 (VCV51_031511)


Aliases : VCV51_031511

Description : DNA polymerase III [Ensembl]. PHP domain, Helix-hairpin-helix motif, OB-fold nucleic acid binding domain, Bacterial DNA polymerase III alpha NTPase domain, Bacterial DNA polymerase III alpha subunit finger domain [Interproscan].


Gene families : OG_02_0000325 (OrthoFinder) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA51808
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC73295 dnaE, b0184 DNA polymerase III alpha subunit [Ensembl]. PHP domain,... 0.06 OrthoFinder
AAK99599 spr0795, dnaE DNA-polymerase III alpha-chain [Ensembl]. PHP domain,... 0.03 OrthoFinder
AAL19195 STM0231, dnaE DNA polymerase III, alpha subunit [Ensembl]. PHP domain,... 0.05 OrthoFinder
ADK86787 MPNE_0440 putative DNA polymerase III, alpha subunit [Ensembl].... 0.02 OrthoFinder
AGT25840 N559_4216 DNA polymerase III subunit alpha [Ensembl]. Bacterial... 0.04 OrthoFinder
AHY39947 dnaE, CJ8421_03540 DNA polymerase III subunit alpha [Ensembl]. PHP domain,... 0.03 OrthoFinder
AKP15394 dnaE, WX61_01347 DNA polymerase III subunit alpha [Ensembl]. PHP domain,... 0.04 OrthoFinder
CCL19840 dnaE, BN171_3540005 DNA polymerase III DnaE subunit alpha [Ensembl]. PHP... 0.03 OrthoFinder
CCP44311 dnaE1, Rv1547 Probable DNA polymerase III (alpha chain) DnaE1 (DNA... 0.02 OrthoFinder
CCP46191 dnaE2, Rv3370c Probable DNA polymerase III (alpha chain) DnaE2 (DNA... 0.02 OrthoFinder
CPD27156 dnaE, ERS093114_02435 DNA polymerase III alpha subunit [Ensembl]. PHP domain,... 0.03 OrthoFinder
CRO13404 dnaE DNA polymerase III subunit alpha [Ensembl]. PHP domain,... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
CC GO:0009295 nucleoid IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043213 bacteriocin transport IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 999 1071
IPR029460 DNAPol_HHH 808 897
IPR004013 PHP_dom 8 171
IPR011708 DNA_pol3_alpha_NTPase_dom 292 558
IPR040982 DNA_pol3_finger 561 735
No external refs found!