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  5. KNA58585

KNA58585 (VCV51_031122)


Aliases : VCV51_031122

Description : binding-protein-dependent transport system inner membrane component [Ensembl]. N-terminal TM domain of oligopeptide transport permease C, Binding-protein-dependent transport system inner membrane component [Interproscan].


Gene families : OG_02_0000041 (OrthoFinder) Phylogenetic Tree(s): OG0000041_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA58585
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC73919 gsiD, b0832 glutathione ABC transporter permease [Ensembl].... 0.02 OrthoFinder
AAC74327 oppC, b1245 oligopeptide ABC transporter permease [Ensembl].... 0.02 OrthoFinder
AAC74374 sapC, b1292 antimicrobial peptide transport ABC transporter permease... 0.03 OrthoFinder
AAC74558 ddpC, b1485 D,D-dipeptide ABC transporter permease [Ensembl].... 0.01 OrthoFinder
AAC76567 dppC, b3542 dipeptide/heme ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAL00508 spr1705, amiD ABC transporter membrane-spanning permease-oligopeptide... 0.02 OrthoFinder
AAL19787 STM0851, yliD putative ABC transporter inner membrane component... 0.04 OrthoFinder
AAL20183 STM1257 putative ABC transporter [Ensembl].... 0.03 OrthoFinder
AAL20611 STM1694, sapC ABC superfamily peptide transport protein [Ensembl].... 0.04 OrthoFinder
AEA95054 opp2C, OG1RF_12367 ABC superfamily ATP binding cassette transporter, ABC... 0.03 OrthoFinder
AGT22075 N559_0253 dipeptide transporter [Ensembl]. N-terminal TM domain of... 0.03 OrthoFinder
AGT24127 N559_2434 putative ABC transport system permease protein... 0.02 OrthoFinder
AGT25117 N559_3466 putative ABC transport system permease component... 0.05 OrthoFinder
AGT25385 N559_3747 putative ABC transport system permease protein... 0.03 OrthoFinder
AKI48109 L2625_00136 oligopeptide ABC transporter, permease protein... 0.02 OrthoFinder
CCG26342 OppC Oligopeptide transport system permease protein OppC (TC... 0.03 OrthoFinder
CPC32230 gsiD_1, ERS093114_00036 nickel transport system permease protein [Ensembl].... 0.03 OrthoFinder
CPC43895 oppC_2, ERS093114_00442 Oligopeptide transport system permease protein oppC... 0.02 OrthoFinder
CPC72124 opp-3C, ERS093114_01159 oligopeptide permease%2C channel-forming protein... 0.03 OrthoFinder
CPC95740 gsiD_2, ERS093114_01724 Oligopeptide transport system permease protein... 0.03 OrthoFinder
CRP12184 dppC Dipeptide transport system permease protein DppC... 0.04 OrthoFinder
EDJ90655 CGSHi22421_04078 dipeptide transport system permease protein [Ensembl].... 0.07 OrthoFinder
EDJ90882 CGSHi22421_03498 peptide ABC transporter permease protein [Ensembl].... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043213 bacteriocin transport IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
MF GO:0045301 tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 112 294
IPR025966 OppC_N 14 65
No external refs found!