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  5. KNA58956

KNA58956 (VCV51_031243)


Aliases : VCV51_031243

Description : sigma-54 interaction domain-containing protein [Ensembl]. GAF domain, Sigma-54 interaction domain, Bacterial regulatory protein [Interproscan].


Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA58956
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AAC76865 glnG, b3868 fused DNA-binding response regulator in two-component... 0.04 OrthoFinder
AAL19321 STM0367, prpR regulator for prp operon (EBP family) [Ensembl].... 0.01 OrthoFinder
AAL22844 STM4005, glnG EBP family response regulator in two-component... 0.05 OrthoFinder
AGT26682 N559_5106 nitrogen regulation protein NR(I) [Ensembl]. Sigma-54... 0.04 OrthoFinder
CCL19910 BN171_360004 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.02 OrthoFinder
CRN65608 qseF Quorum-sensing regulator protein F [Ensembl]. Sigma-54... 0.01 OrthoFinder
CRN78675 acoR_1 Acetoin catabolism regulatory protein [Ensembl]. GAF... 0.04 OrthoFinder
CRO45240 ntrC_1 Nitrogen assimilation regulatory protein [Ensembl].... 0.02 OrthoFinder
CRP41187 prpR_2 Propionate catabolism operon regulatory protein... 0.01 OrthoFinder
CRP79684 zraR_6 Transcriptional regulatory protein ZraR [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0042925 benzoate transmembrane transporter activity IEP Enrichment
BP GO:0048870 cell motility IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0071973 bacterial-type flagellum-dependent cell motility IEP Enrichment
BP GO:0097588 archaeal or bacterial-type flagellum-dependent cell motility IEP Enrichment
InterPro domains Description Start Stop
IPR002078 Sigma_54_int 284 445
IPR002197 HTH_Fis 555 581
IPR003018 GAF 83 183
No external refs found!