KNA59372 (VCV51_031318)

Aliases : VCV51_031318

Description : LysR substrate binding domain-containing protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA59372
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AGT22561	N559_0770	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AGT23444	N559_1702	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AGT23535	N559_1799	LysR substrate binding domain protein [Ensembl]. LysR...	0.03	OrthoFinder
AGT23560	N559_1826	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT24866	N559_3206	LysR substrate binding domain protein [Ensembl]. LysR...	0.03	OrthoFinder
AGT24894	N559_3234	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AKP14845	dmlR_2, WX61_00778	HTH-type transcriptional regulator DmlR [Ensembl]. LysR...	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Enrichment
MF	GO:0003714	transcription corepressor activity	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
BP	GO:0006163	purine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006284	base-excision repair	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009259	ribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009271	phage shock	IEP	Enrichment
BP	GO:0009605	response to external stimulus	IEP	Enrichment
BP	GO:0009607	response to biotic stimulus	IEP	Enrichment
BP	GO:0009615	response to virus	IEP	Enrichment
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Enrichment
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Enrichment
MF	GO:0016989	sigma factor antagonist activity	IEP	Enrichment
BP	GO:0019693	ribose phosphate metabolic process	IEP	Enrichment
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0043207	response to external biotic stimulus	IEP	Enrichment
MF	GO:0043768	S-ribosylhomocysteine lyase activity	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
MF	GO:0051536	iron-sulfur cluster binding	IEP	Enrichment
MF	GO:0051540	metal cluster binding	IEP	Enrichment
BP	GO:0051707	response to other organism	IEP	Enrichment
BP	GO:0098586	cellular response to virus	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	82	288
IPR000847	Tscrpt_reg_HTH_LysR	1	56

External Links

No external refs found!

KNA59372 (VCV51_031318)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation