Aliases : VCV51_031318
Description : LysR substrate binding domain-containing protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].
Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: KNA59372 | |
Cluster | HCCA: Cluster_11 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AGT22561 | N559_0770 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.05 | OrthoFinder | |
AGT23444 | N559_1702 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.05 | OrthoFinder | |
AGT23535 | N559_1799 | LysR substrate binding domain protein [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AGT23560 | N559_1826 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.02 | OrthoFinder | |
AGT24866 | N559_3206 | LysR substrate binding domain protein [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AGT24894 | N559_3234 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.05 | OrthoFinder | |
AKP14845 | dmlR_2, WX61_00778 | HTH-type transcriptional regulator DmlR [Ensembl]. LysR... | 0.06 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003712 | transcription coregulator activity | IEP | Enrichment |
MF | GO:0003714 | transcription corepressor activity | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | Enrichment |
BP | GO:0006284 | base-excision repair | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006950 | response to stress | IEP | Enrichment |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Enrichment |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | Enrichment |
BP | GO:0009271 | phage shock | IEP | Enrichment |
BP | GO:0009605 | response to external stimulus | IEP | Enrichment |
BP | GO:0009607 | response to biotic stimulus | IEP | Enrichment |
BP | GO:0009615 | response to virus | IEP | Enrichment |
BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Enrichment |
MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Enrichment |
MF | GO:0016989 | sigma factor antagonist activity | IEP | Enrichment |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | Enrichment |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Enrichment |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Enrichment |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Enrichment |
BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0043207 | response to external biotic stimulus | IEP | Enrichment |
MF | GO:0043768 | S-ribosylhomocysteine lyase activity | IEP | Enrichment |
BP | GO:0050896 | response to stimulus | IEP | Enrichment |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Enrichment |
MF | GO:0051540 | metal cluster binding | IEP | Enrichment |
BP | GO:0051707 | response to other organism | IEP | Enrichment |
BP | GO:0098586 | cellular response to virus | IEP | Enrichment |
No external refs found! |