KNA59372 (VCV51_031318)


Aliases : VCV51_031318

Description : LysR substrate binding domain-containing protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA59372
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AGT22561 N559_0770 LysR family transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AGT23444 N559_1702 LysR family transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AGT23535 N559_1799 LysR substrate binding domain protein [Ensembl]. LysR... 0.03 OrthoFinder
AGT23560 N559_1826 LysR family transcriptional regulator [Ensembl]. LysR... 0.02 OrthoFinder
AGT24866 N559_3206 LysR substrate binding domain protein [Ensembl]. LysR... 0.03 OrthoFinder
AGT24894 N559_3234 LysR family transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AKP14845 dmlR_2, WX61_00778 HTH-type transcriptional regulator DmlR [Ensembl]. LysR... 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
MF GO:0016989 sigma factor antagonist activity IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
MF GO:0043768 S-ribosylhomocysteine lyase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 82 288
IPR000847 Tscrpt_reg_HTH_LysR 1 56
No external refs found!