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  5. KNA59432

KNA59432 (VCV51_031278)


Aliases : VCV51_031278

Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA59432
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC74198 mfd, b1114 transcription-repair coupling factor [Ensembl].... 0.04 OrthoFinder
AAL20145 STM1216, mfd transcription-repair coupling factor [Ensembl].... 0.06 OrthoFinder
AEA92888 trcF, OG1RF_10201 transcription-repair coupling factor [Ensembl].... 0.02 OrthoFinder
AGT24835 N559_3175 transcription-repair coupling factor [Ensembl]. TRCF... 0.06 OrthoFinder
AKP14165 mfd, WX61_00076 Transcription-repair-coupling factor [Ensembl].... 0.04 OrthoFinder
CBI67226 mfd, HPB8_1669 transcription-repair coupling factor (superfamily II... 0.05 OrthoFinder
CCG27416 No alias Transcription-repair coupling factor [Ensembl].... 0.03 OrthoFinder
EDJ91013 CGSHi22421_02786 transcription-repair coupling factor [Ensembl].... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
MF GO:0008852 exodeoxyribonuclease I activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0070206 protein trimerization IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003711 CarD-like/TRCF_domain 482 577
IPR005118 TRCF_C 1012 1102
IPR011545 DEAD/DEAH_box_helicase_dom 607 767
IPR001650 Helicase_C 809 911
IPR041471 UvrB_inter 132 219
No external refs found!