Aliases : VCV51_031278
Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].
Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: KNA59432 | |
Cluster | HCCA: Cluster_11 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC74198 | mfd, b1114 | transcription-repair coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
AAL20145 | STM1216, mfd | transcription-repair coupling factor [Ensembl].... | 0.06 | OrthoFinder | |
AEA92888 | trcF, OG1RF_10201 | transcription-repair coupling factor [Ensembl].... | 0.02 | OrthoFinder | |
AGT24835 | N559_3175 | transcription-repair coupling factor [Ensembl]. TRCF... | 0.06 | OrthoFinder | |
AKP14165 | mfd, WX61_00076 | Transcription-repair-coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
CBI67226 | mfd, HPB8_1669 | transcription-repair coupling factor (superfamily II... | 0.05 | OrthoFinder | |
CCG27416 | No alias | Transcription-repair coupling factor [Ensembl].... | 0.03 | OrthoFinder | |
EDJ91013 | CGSHi22421_02786 | transcription-repair coupling factor [Ensembl].... | 0.05 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Enrichment |
MF | GO:0003909 | DNA ligase activity | IEP | Enrichment |
MF | GO:0003911 | DNA ligase (NAD+) activity | IEP | Enrichment |
MF | GO:0004518 | nuclease activity | IEP | Enrichment |
MF | GO:0004527 | exonuclease activity | IEP | Enrichment |
MF | GO:0004529 | exodeoxyribonuclease activity | IEP | Enrichment |
MF | GO:0004536 | deoxyribonuclease activity | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006415 | translational termination | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
BP | GO:0006553 | lysine metabolic process | IEP | Enrichment |
BP | GO:0006629 | lipid metabolic process | IEP | Enrichment |
MF | GO:0008852 | exodeoxyribonuclease I activity | IEP | Enrichment |
MF | GO:0008990 | rRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
BP | GO:0009085 | lysine biosynthetic process | IEP | Enrichment |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Enrichment |
MF | GO:0009378 | four-way junction helicase activity | IEP | Enrichment |
BP | GO:0016043 | cellular component organization | IEP | Enrichment |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
MF | GO:0016895 | exodeoxyribonuclease activity, producing 5'-phosphomonoesters | IEP | Enrichment |
BP | GO:0022411 | cellular component disassembly | IEP | Enrichment |
BP | GO:0030258 | lipid modification | IEP | Enrichment |
BP | GO:0030259 | lipid glycosylation | IEP | Enrichment |
BP | GO:0032984 | protein-containing complex disassembly | IEP | Enrichment |
MF | GO:0034061 | DNA polymerase activity | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
BP | GO:0043165 | Gram-negative-bacterium-type cell outer membrane assembly | IEP | Enrichment |
BP | GO:0043624 | cellular protein complex disassembly | IEP | Enrichment |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
BP | GO:0044255 | cellular lipid metabolic process | IEP | Enrichment |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Enrichment |
BP | GO:0061024 | membrane organization | IEP | Enrichment |
BP | GO:0070085 | glycosylation | IEP | Enrichment |
BP | GO:0070206 | protein trimerization | IEP | Enrichment |
BP | GO:0071709 | membrane assembly | IEP | Enrichment |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
MF | GO:1901681 | sulfur compound binding | IEP | Enrichment |
No external refs found! |