KNA59620 (VCV51_031384)

Aliases : VCV51_031384

Description : FliA/WhiG family RNA polymerase sigma factor [Ensembl]. Sigma-70 region 2, Sigma-70 region 3 [Interproscan].

Gene families : OG_02_0000698 (OrthoFinder) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA59620
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AAC74989	fliA, b1922	RNA polymerase, sigma 28 (sigma F) factor [Ensembl]....	0.07	OrthoFinder
AAL20868	STM1956, fliA	sigma F (sigma 28) factor of RNA polymerase [Ensembl]....	0.08	OrthoFinder
CCL18272	fliA, BN171_220024	RNA polymerase sigma-28factor for flagellar operon...	0.06	OrthoFinder
CRP40256	fliA	Sigma-F factor [Ensembl]. Sigma-70 region 2, Sigma-70...	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
BP	GO:0006103	2-oxoglutarate metabolic process	IEP	Enrichment
BP	GO:0006106	fumarate metabolic process	IEP	Enrichment
BP	GO:0006536	glutamate metabolic process	IEP	Enrichment
BP	GO:0006538	glutamate catabolic process	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
BP	GO:0009063	cellular amino acid catabolic process	IEP	Enrichment
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	Enrichment
CC	GO:0009288	bacterial-type flagellum	IEP	Enrichment
CC	GO:0009424	bacterial-type flagellum hook	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
BP	GO:0016054	organic acid catabolic process	IEP	Enrichment
BP	GO:0019551	glutamate catabolic process to 2-oxoglutarate	IEP	Enrichment
BP	GO:0022607	cellular component assembly	IEP	Enrichment
BP	GO:0030030	cell projection organization	IEP	Enrichment
BP	GO:0032101	regulation of response to external stimulus	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0040012	regulation of locomotion	IEP	Enrichment
BP	GO:0043649	dicarboxylic acid catabolic process	IEP	Enrichment
BP	GO:0044781	bacterial-type flagellum organization	IEP	Enrichment
BP	GO:0046395	carboxylic acid catabolic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
BP	GO:0050920	regulation of chemotaxis	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007630	RNA_pol_sigma70_r4	136	183
IPR007624	RNA_pol_sigma70_r3	49	121
IPR007627	RNA_pol_sigma70_r2	1	40

External Links

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KNA59620 (VCV51_031384)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation