Aliases : OG1RF_12574
Description : response regulator [Ensembl]. Response regulator receiver domain, Transcriptional regulatory protein [Interproscan].
Gene families : OG_02_0000001 (OrthoFinder) Phylogenetic Tree(s): OG0000001_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AEA95261 | |
Cluster | HCCA: Cluster_7 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC76061 | qseB, b3025 | quorum sensing DNA-binding response regulator in... | 0.01 | OrthoFinder | |
AAC77074 | basR, b4113 | response regulator in two-component regulatory system... | 0.03 | OrthoFinder | |
AAK98880 | spr0076, rr08 | Response regulator [Ensembl]. Transcriptional regulatory... | 0.04 | OrthoFinder | |
AAK99382 | spr0578, rr09 | Response regulator [Ensembl]. Helix-turn-helix domain,... | 0.05 | OrthoFinder | |
AAK99910 | spr1107, rr02 | Response regulator [Ensembl]. Transcriptional regulatory... | 0.05 | OrthoFinder | |
AAL00800 | spr1998, rr06 | Response regulator [Ensembl]. Transcriptional regulatory... | 0.04 | OrthoFinder | |
AAL21035 | STM2131, baeR | response regulator in two-component regulatory system... | 0.02 | OrthoFinder | |
AAL23116 | STM4292, basR | response regulator in two-component regulatory system... | 0.02 | OrthoFinder | |
AKI49504 | L2625_01607 | DNA-binding response regulator [Ensembl]. Signal... | 0.04 | OrthoFinder | |
AKP15489 | ompR, WX61_01443 | Transcriptional regulatory protein OmpR [Ensembl].... | 0.05 | OrthoFinder | |
CCG26420 | CsrR | Response regulator CsrR [Ensembl]. Response regulator... | 0.03 | OrthoFinder | |
CCG27642 | No alias | Two-component response regulator SA14-24 [Ensembl].... | 0.03 | OrthoFinder | |
CCL18472 | BN171_2380003 | Two-component response regulator [Ensembl]. Response... | 0.04 | OrthoFinder | |
CCL19656 | BN171_3350005 | Two-component response regulator [Ensembl]. Response... | 0.03 | OrthoFinder | |
CCL20068 | BN171_3690012 | Two-component response regulator, CheY family [Ensembl].... | 0.05 | OrthoFinder | |
CCL20251 | BN171_390005 | Two-component response regulator [Ensembl]. Response... | 0.03 | OrthoFinder | |
CCP43225 | regX3, Rv0491 | Two component sensory transduction protein RegX3... | 0.02 | OrthoFinder | |
CPC70217 | vicR, ERS093114_01104 | Two-component response regulator [Ensembl].... | 0.02 | OrthoFinder | |
CRN89694 | tctD | Transcriptional regulatory protein tctD [Ensembl].... | 0.03 | OrthoFinder | |
CRO52494 | czcR_1 | Transcriptional activator protein CzcR [Ensembl].... | 0.01 | OrthoFinder | |
CRP58313 | czcR_4 | Transcriptional activator protein CzcR [Ensembl].... | 0.01 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000160 | phosphorelay signal transduction system | IEA | Interproscan |
MF | GO:0003677 | DNA binding | IEA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
BP | GO:0002949 | tRNA threonylcarbamoyladenosine modification | IEP | Enrichment |
MF | GO:0003924 | GTPase activity | IEP | Enrichment |
MF | GO:0004127 | cytidylate kinase activity | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006282 | regulation of DNA repair | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0008033 | tRNA processing | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0048583 | regulation of response to stimulus | IEP | Enrichment |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Enrichment |
BP | GO:0070525 | tRNA threonylcarbamoyladenosine metabolic process | IEP | Enrichment |
BP | GO:0080134 | regulation of response to stress | IEP | Enrichment |
BP | GO:0080135 | regulation of cellular response to stress | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | Enrichment |
No external refs found! |