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  5. AAC74367

AAC74367 (pdeR, b1285)


Aliases : pdeR, b1285

Description : cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability [Ensembl]. EAL domain, PAS domain, Diguanylate cyclase [Interproscan].


Gene families : OG_02_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAC74367
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AAC73920 pdeI, b0833 putative membrane-anchored cyclic-di-GMP... 0.02 OrthoFinder
AAL20621 STM1703, yciR putative PAS/PAC domain protein [Ensembl]. EAL domain,... 0.03 OrthoFinder
AGT23390 N559_1644 hypothetical protein [Ensembl]. EAL domain, CSS... 0.03 OrthoFinder
AGT24306 N559_2630 hypothetical protein [Ensembl]. GGDEF domain, PAS... 0.04 OrthoFinder
CCL17607 BN171_1610003 Putative diguanylate kinase signaling protein [Ensembl].... 0.03 OrthoFinder
CCL17821 BN171_1820001 Putative diguanylate kinase signaling protein [Ensembl].... 0.03 OrthoFinder
CCL19398 BN171_3100004 Putative signaling protein [Ensembl]. Diguanylate... 0.05 OrthoFinder
CCP44112 Rv1354c Conserved hypothetical protein [Ensembl]. EAL domain,... 0.02 OrthoFinder
CRO28822 gmr_4 Cyclic di-GMP phosphodiesterase Gmr [Ensembl]. EAL... 0.03 OrthoFinder
CRP17759 cph2_7 Bacteriophytochrome cph2 [Ensembl]. EAL domain, Response... 0.03 OrthoFinder
KNA55085 VCV51_031848 EAL domain-containing protein [Ensembl]. EAL domain,... 0.04 OrthoFinder
KNA60571 VCV51_032242 EAL domain-containing protein [Ensembl]. EAL domain,... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
MF GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0030243 cellulose metabolic process IEP Enrichment
BP GO:0030244 cellulose biosynthetic process IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001633 EAL_dom 412 644
IPR000014 PAS 123 225
IPR000160 GGDEF_dom 237 390
UniProtKB P77334