Aliases : CJ8421_04960
Description : putative transcriptional regulator (lysR family) protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].
Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AHY40206 | |
Cluster | HCCA: Cluster_1 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAL19636 | STM0692 | putative LysR family transcriptional regulator... | 0.03 | OrthoFinder | |
AAL20406 | STM1487, ynfL | putative LysR family transcriptional regulator... | 0.02 | OrthoFinder | |
AEA93063 | OG1RF_10376 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.02 | OrthoFinder | |
AEA93337 | OG1RF_10650 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AEA94928 | OG1RF_12241 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AGT23447 | N559_1705 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AGT23721 | N559_1994 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AGT26415 | N559_4829 | LysR family transcriptional regulator [Ensembl]. LysR... | 0.03 | OrthoFinder | |
AKP14096 | tfdR, WX61_00007 | HTH-type transcriptional regulator TdfR [Ensembl].... | 0.03 | OrthoFinder | |
CRO72266 | cynR_2 | Cyn operon transcriptional activator [Ensembl]. LysR... | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001216 | DNA-binding transcription activator activity | IEP | Enrichment |
MF | GO:0004518 | nuclease activity | IEP | Enrichment |
MF | GO:0004519 | endonuclease activity | IEP | Enrichment |
MF | GO:0004521 | endoribonuclease activity | IEP | Enrichment |
MF | GO:0004525 | ribonuclease III activity | IEP | Enrichment |
MF | GO:0004540 | ribonuclease activity | IEP | Enrichment |
MF | GO:0004576 | oligosaccharyl transferase activity | IEP | Enrichment |
CC | GO:0005575 | cellular_component | IEP | Enrichment |
BP | GO:0006486 | protein glycosylation | IEP | Enrichment |
CC | GO:0016020 | membrane | IEP | Enrichment |
BP | GO:0016311 | dephosphorylation | IEP | Enrichment |
MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | Enrichment |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Enrichment |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Enrichment |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Enrichment |
BP | GO:0043413 | macromolecule glycosylation | IEP | Enrichment |
BP | GO:0043570 | maintenance of DNA repeat elements | IEP | Enrichment |
BP | GO:0043571 | maintenance of CRISPR repeat elements | IEP | Enrichment |
No external refs found! |