1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_4 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
11168-O,WT,biofilm extract
11168-O,WT,planktonic cell extract
CG8433,WT,mid-log,Mueller Hinton agar plate
CG8433,WT,mid-log,Mueller Hinton broth
CG8433,WT,mid-log,blood agar plate
NCTC11168,CRISPR-tracrRNA-KO
NCTC11168,WT
NCTC11168,WT,Fe limited
NCTC11168,WT,Fe replete
NCTC11168,WT,chicken intestinal mucus
NCTC11168,WT,cow intestinal mucus
NCTC11168,WT,defined media
NCTC11168,WT,pig intestinal mucus
NCTC11168,WT,sheep intestinal mucus
NCTC11168,WT,turkey intestinal mucus
NCTC11168,cas9-KO
NCTC11168,crRNA3-KO
NCTC11168,fur-KO,Fe limited
NCTC11168,fur-KO,Fe replete
NCTC11168,fur-KO,perR-KO,Fe limited
NCTC11168,fur-KO,perR-KO,Fe replete
NCTC11168,perR-KO,Fe limited
NCTC11168,perR-KO,Fe replete
NCTC11168,tracrRNA-KO
NCTC12661,WT,exponential,spiral
NCTC12661,WT,stationary,filamentous
NCTC12661,WT,stationary,spiral
PT14,WT,exponential,spiral
PT14,WT,stationary,filamentous
PT14,WT,stationary,spiral
Sheep Abortion,WT,24h bile inoculate
Sheep Abortion,WT,24h gallbladder inoculate
Sheep Abortion,WT,2h bile inoculate
Sheep Abortion,WT,2h gallbladder inoculate
Sheep Abortion,WT,laboratory culture
AHY39308 (CJ8421_00175)
 0.0 0.0 2.39 0.7 2.48 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39310 (CJ8421_00185)
 238.51 502.54 835.8 678.01 2153.01 93.16 81.76 610.51 220.24 653.74 424.05 407.25 498.53 418.25 533.09 85.08 77.57 481.55 220.84 428.0 236.29 1134.29 687.21 82.3 419.54 119.98 117.64 1192.17 429.85 660.95 818.9 431.3 648.83 633.73 544.09
AHY39313 (CJ8421_00200)
 456.22 250.19 461.19 296.49 4354.18 50.58 53.14 466.12 914.83 1273.71 3238.19 3087.12 4182.15 2700.86 2162.23 36.95 32.83 379.41 518.68 551.85 1238.8 1365.98 1786.39 57.11 1309.85 1200.39 785.02 1445.21 391.32 769.84 923.01 196.12 638.4 377.31 778.61
AHY39318 (flgD)
 418.62 897.13 1065.52 1553.81 3304.94 251.04 213.66 105.55 457.98 536.73 962.01 689.84 1178.99 749.63 991.11 197.98 191.77 38.83 331.37 61.32 323.35 771.49 809.02 299.61 1134.97 74.5 181.07 1273.68 449.17 1313.61 1505.53 2981.19 1832.93 1874.8 986.4
AHY39330 (CJ8421_00285)
 2.29 1.92 476.6 472.91 680.81 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39595 (CJ8421_01700)
 0.0 0.0 0.19 0.07 0.09 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39596 (CJ8421_01705)
 0.22 0.2 0.54 0.11 0.28 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39597 (CJ8421_01710)
 7.03 0.55 4.63 2.77 3.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39647 (CJ8421_01960)
 478.77 3231.45 3594.88 6123.95 28576.87 379.8 408.72 778.17 2937.33 7059.97 9482.36 4780.76 9247.64 7780.19 9071.24 427.32 373.95 768.98 2666.76 704.94 1567.06 2173.83 2657.4 443.81 9700.84 3014.37 1882.31 10963.12 5036.64 17838.1 8679.7 12839.67 10845.37 7868.93 7502.98
AHY39679 (CJ8421_02120)
 0.0 0.19 24.39 14.51 11.5 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39680 (CJ8421_02125)
 0.0 0.0 31.01 13.77 8.84 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39681 (CJ8421_02130)
 0.0 0.0 25.41 12.81 9.33 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39765 (fliE)
 126.93 567.97 1299.15 1233.18 1894.43 1363.17 1000.89 1837.53 825.6 1673.32 2413.22 1256.87 2604.44 2276.31 1788.63 1199.66 1376.5 1746.87 671.82 1349.7 623.53 1767.71 894.41 1230.67 2469.3 2296.14 1552.11 2115.38 2536.74 3665.63 1761.16 4421.53 1752.59 2228.61 1454.33
AHY39766 (flgC)
 428.7 1238.14 1214.96 1314.82 2805.06 1620.62 1505.4 1626.76 1032.96 2000.03 3255.9 1575.49 3873.54 2902.37 2542.55 1355.59 1457.91 1426.91 898.71 1225.7 791.87 1892.12 1055.29 1671.79 3264.12 2171.28 2064.72 3620.35 2903.02 4167.0 2034.2 4899.95 2058.97 2293.23 1535.33
AHY39767 (flgB)
 599.78 1928.86 738.08 606.49 2770.17 495.15 469.55 409.17 658.93 663.86 749.01 1333.54 1131.14 753.41 687.86 451.9 402.53 295.88 468.34 286.77 451.15 1489.59 854.06 521.88 2456.95 498.37 519.08 2902.22 1461.0 3967.52 2054.07 6874.05 1834.75 2389.02 1472.14
AHY39865 (CJ8421_03070)
 0.0 0.0 38.23 28.93 28.18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39866 (CJ8421_03075)
 0.0 0.0 7.77 4.81 3.6 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY39917 (flgH)
 1235.55 2139.13 878.42 1296.55 7121.98 267.81 206.94 113.8 473.37 547.16 967.25 843.37 1530.16 896.37 998.13 201.54 230.42 51.62 332.79 78.15 266.13 995.22 682.13 317.45 1665.27 116.38 190.82 1346.66 522.75 1897.04 1340.45 3597.26 1231.68 1257.38 697.45
AHY39927 (CJ8421_03430)
 669.35 1436.56 846.75 1324.22 3967.74 339.42 284.85 161.89 584.58 439.7 910.11 957.62 1380.04 775.84 816.59 273.27 266.73 87.2 382.57 123.66 376.81 1189.58 894.3 380.06 2041.07 139.22 169.3 1886.98 1136.0 2972.2 1699.3 5109.72 2069.91 1861.55 1313.59
AHY39928 (flgG)
 738.48 813.52 868.85 1368.35 4041.7 125.63 120.46 297.92 573.7 430.15 843.94 916.24 1166.5 592.0 769.56 94.41 101.11 167.79 398.08 189.69 397.12 1032.98 862.36 180.37 2060.35 134.87 259.06 1999.78 1044.77 2949.1 1695.2 5020.56 2295.48 2355.23 1297.22
AHY39986 (CJ8421_03785)
 182.02 1459.37 1033.59 1492.27 7236.83 231.14 195.0 661.73 604.04 2377.13 2553.47 1766.74 2910.47 2419.88 2275.76 185.27 227.65 584.05 516.3 541.33 650.93 1394.68 897.1 255.09 2735.47 843.63 1389.94 4382.44 1341.14 4255.56 1841.14 4231.85 3704.06 2451.28 1800.08
AHY40029 (CJ8421_04000)
 0.0 0.0 112.85 125.16 124.49 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40030 (CJ8421_04005)
 0.0 0.0 303.03 389.77 797.57 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40031 (CJ8421_04010)
 0.0 0.0 283.79 305.07 586.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.45 0.0 0.0 0.0 0.0
AHY40035 (CJ8421_04030)
 0.0 0.0 130.1 218.85 167.54 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 126.49 119.91 37.91 99.05 46.7
AHY40036 (CJ8421_04035)
 0.0 0.0 126.65 225.85 134.73 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40037 (CJ8421_04040)
 0.0 0.0 160.79 246.92 254.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40082 (CJ8421_04275)
 942.76 1774.88 583.72 803.73 5221.12 181.76 155.69 159.16 231.37 1572.62 1804.86 1117.94 2783.37 1920.5 2506.11 186.07 175.62 172.24 279.03 94.49 168.91 557.67 423.75 229.7 280.4 72.3 93.49 35.55 22.17 104.65 86.83 118.7 55.38 71.89 71.3
AHY40101 (CJ8421_04390)
 725.71 925.66 278.17 419.71 2573.56 138.25 121.94 86.19 266.83 484.16 766.08 692.45 1004.95 692.45 795.9 97.89 108.26 47.24 220.21 55.7 178.44 406.87 471.31 153.66 791.15 63.42 108.45 639.84 395.57 1009.51 1094.1 3421.02 839.15 1379.3 513.08
AHY40219 (CJ8421_05025)
 0.0 0.0 0.93 0.0 0.61 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40233 (CJ8421_05095)
 248.46 2622.89 3627.22 4842.16 13249.83 823.95 928.07 884.25 1804.86 2135.99 2967.81 3047.05 3554.59 2470.24 2463.15 938.9 676.43 860.95 1305.43 896.38 1300.29 3064.41 2624.68 1094.96 6807.1 1303.38 1358.79 5346.71 3395.67 7542.5 5648.29 10787.71 8027.94 7595.65 5292.74
AHY40346 (CJ8421_05670)
 0.0 0.0 1.7 0.44 1.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.33 0.0
AHY40446 (CJ8421_06195)
 435.4 7771.28 1818.19 2696.52 19552.93 2539.32 2212.25 530.37 2117.61 2152.58 3939.04 5456.79 7383.88 4077.16 3480.54 1835.1 2123.89 337.19 1319.64 413.57 1303.49 3611.99 2146.27 3441.88 6974.86 508.17 2621.07 3525.69 1120.27 3232.42 5479.94 22437.9 3555.32 6725.58 2552.53
AHY40462 (CJ8421_06275)
 18392.87 18839.42 90534.6 92774.8 96323.9 727.94 939.18 7637.52 17152.97 21854.47 22572.22 12713.39 21765.57 19661.22 21795.1 972.34 731.67 8927.41 17653.2 10205.17 17239.57 13308.23 19952.37 800.51 21330.03 15464.32 25570.45 27297.06 15439.29 16002.35 15496.95 4777.62 19444.3 12206.23 19573.78
AHY40495 (CJ8421_06440)
 979.93 1056.91 742.83 1046.67 7956.76 83.53 78.34 186.02 259.46 691.45 1168.7 607.16 1470.7 949.36 1082.51 64.92 77.21 129.99 230.32 146.81 220.04 594.89 433.57 95.91 851.34 209.64 277.53 870.86 270.26 746.67 1190.39 2607.22 1721.84 1506.54 897.27
AHY40534 (CJ8421_06685)
 8750.44 9962.87 18991.27 16952.3 53056.47 789.17 960.75 1901.75 6547.39 17933.6 20475.03 8897.1 18056.67 16623.42 22849.83 870.5 741.51 1030.8 1693.86 716.57 1931.74 3241.45 6445.25 1081.78 9052.49 2224.32 1224.11 7783.4 4889.33 13305.03 16447.51 18327.95 30124.47 22727.6 22238.8
AHY40551 (CJ8421_06800)
 110.84 699.01 113.79 243.98 303.08 277.45 315.48 18.38 438.57 12.28 13.52 102.83 14.36 10.81 1.52 326.92 361.33 378.48 343.39 395.95 504.25 37.42 214.75 408.81 1208.24 7.61 41.75 437.93 234.64 269.01 281.71 409.86 268.67 204.34 178.67
AHY40642 (flgI)
 388.44 436.77 687.54 955.29 7417.57 378.28 364.95 84.76 338.55 778.15 1433.57 658.85 2030.59 1176.56 1477.97 350.15 292.61 33.15 238.44 48.02 228.45 720.98 589.07 425.95 1456.39 107.08 193.85 1333.83 510.58 2049.1 906.92 2177.64 1130.63 1183.8 680.45
AHY40646 (flgK)
 724.42 450.53 400.45 564.03 1909.59 83.67 79.21 81.65 237.09 368.33 517.77 363.75 631.62 463.24 504.53 57.17 68.93 47.87 172.43 50.72 142.27 345.63 347.11 97.73 470.86 102.9 103.57 365.6 212.1 502.34 590.71 1826.49 597.55 848.3 365.15
AHY40702 (CJ8421_07640)
 0.0 0.0 30.62 10.86 20.29 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40721 (CJ8421_07735)
 0.0 0.0 0.95 0.69 0.68 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40724 (CJ8421_07750)
 0.0 0.0 6.52 5.74 3.84 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40726 (CJ8421_07760)
 3.56 1.22 7.75 3.04 3.45 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40842 (CJ8421_08350)
 0.0 0.0 5.45 2.88 7.16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40843 (CJ8421_08355)
 0.0 0.0 791.48 739.89 1093.5 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40844 (CJ8421_08360)
 0.0 0.0 0.73 0.34 0.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40845 (CJ8421_08365)
 0.0 0.0 37.95 27.28 34.38 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40846 (CJ8421_08370)
 0.0 0.0 197.73 143.1 136.31 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40847 (CJ8421_08375)
 0.0 0.0 1.22 0.43 0.86 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40848 (CJ8421_08380)
 0.0 0.0 0.2 0.2 0.16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40851 (CJ8421_08395)
 0.0 0.0 1.33 1.03 1.32 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40852 (CJ8421_08400)
 0.0 0.0 186.23 181.19 232.46 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40853 (CJ8421_08405)
 0.0 0.0 4.23 0.45 7.41 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40854 (CJ8421_08410)
 0.0 0.0 0.12 0.06 0.34 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40855 (CJ8421_08415)
 0.0 0.0 0.66 0.0 0.79 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40856 (CJ8421_08420)
 0.0 0.0 0.38 0.0 0.45 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AHY40857 (CJ8421_08425)
 0.0 0.0 36.49 29.04 32.75 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)