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Heatmap: Cluster_16 (HCCA)

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(Showing raw values)

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Gene
11168-O,WT,biofilm extract
11168-O,WT,planktonic cell extract
CG8433,WT,mid-log,Mueller Hinton agar plate
CG8433,WT,mid-log,Mueller Hinton broth
CG8433,WT,mid-log,blood agar plate
NCTC11168,CRISPR-tracrRNA-KO
NCTC11168,WT
NCTC11168,WT,Fe limited
NCTC11168,WT,Fe replete
NCTC11168,WT,chicken intestinal mucus
NCTC11168,WT,cow intestinal mucus
NCTC11168,WT,defined media
NCTC11168,WT,pig intestinal mucus
NCTC11168,WT,sheep intestinal mucus
NCTC11168,WT,turkey intestinal mucus
NCTC11168,cas9-KO
NCTC11168,crRNA3-KO
NCTC11168,fur-KO,Fe limited
NCTC11168,fur-KO,Fe replete
NCTC11168,fur-KO,perR-KO,Fe limited
NCTC11168,fur-KO,perR-KO,Fe replete
NCTC11168,perR-KO,Fe limited
NCTC11168,perR-KO,Fe replete
NCTC11168,tracrRNA-KO
NCTC12661,WT,exponential,spiral
NCTC12661,WT,stationary,filamentous
NCTC12661,WT,stationary,spiral
PT14,WT,exponential,spiral
PT14,WT,stationary,filamentous
PT14,WT,stationary,spiral
Sheep Abortion,WT,24h bile inoculate
Sheep Abortion,WT,24h gallbladder inoculate
Sheep Abortion,WT,2h bile inoculate
Sheep Abortion,WT,2h gallbladder inoculate
Sheep Abortion,WT,laboratory culture
AHY39287 (rnhB)
 210.54 409.24 327.67 112.9 95.48 124.96 140.1 113.11 162.76 73.93 194.91 235.23 191.03 140.41 49.46 110.09 135.63 152.16 125.8 162.65 337.04 99.83 210.38 391.9 646.65 144.62 883.12 928.24 338.8 173.55 290.49 524.77 243.71 657.44 303.77
AHY39332 (CJ8421_00305)
 149.26 28.34 2.34 1.2 1.03 67.57 72.72 69.74 28.82 43.79 9.31 61.53 12.01 12.85 12.85 53.7 62.06 52.65 25.53 61.18 36.68 58.49 42.47 65.32 55.97 19.2 50.29 74.01 52.05 41.69 23.11 102.1 4.56 27.35 12.86
AHY39388 (CJ8421_00585)
 941.39 1773.79 1729.23 1277.82 794.41 694.26 615.79 806.26 1373.0 488.85 849.41 746.61 631.93 674.37 562.01 472.29 635.87 851.67 1365.15 930.5 1100.06 709.67 955.63 604.96 895.4 634.23 1569.86 611.29 385.83 230.47 1556.11 917.77 1774.79 2476.98 1547.3
AHY39392 (CJ8421_00605)
 14.4 30.24 29.24 8.23 5.85 401.23 333.35 144.29 180.52 10.85 2.84 78.51 2.98 4.14 1.57 237.66 381.99 166.73 171.19 214.76 163.6 60.82 64.61 305.18 207.44 46.04 241.36 193.71 152.0 14.51 136.52 260.41 40.2 197.7 53.19
AHY39414 (CJ8421_00725)
 193.75 174.39 84.08 42.56 45.64 95.97 102.29 212.69 158.51 107.78 157.57 268.19 147.03 156.95 87.0 83.37 120.33 248.68 174.18 272.85 205.26 157.72 142.23 90.41 159.57 90.35 206.28 208.66 126.51 67.15 137.75 109.5 121.73 215.13 126.88
AHY39535 (CJ8421_01375)
 1257.83 373.91 910.53 652.06 373.12 491.02 410.37 313.72 407.56 269.52 353.06 390.35 267.14 318.06 240.18 317.36 422.25 351.03 441.06 337.18 360.44 191.89 333.02 453.16 575.15 413.03 644.9 514.47 400.62 211.27 772.15 550.25 852.05 989.57 743.62
AHY39546 (CJ8421_01430)
 74.63 30.77 170.67 70.89 67.78 160.24 148.68 288.15 223.42 72.2 75.4 232.69 87.18 79.31 42.68 159.75 175.39 263.75 218.15 285.66 249.79 210.62 164.66 149.49 165.98 44.61 74.63 483.38 224.75 184.19 171.44 252.1 74.77 226.43 119.49
AHY39634 (CJ8421_01895)
 13.77 9.91 1.62 0.34 1.7 25.69 24.47 52.21 3.13 3.31 0.32 34.31 0.08 0.23 2.3 21.88 26.32 52.57 2.88 46.91 19.42 34.87 18.31 25.28 38.19 32.24 47.94 56.04 24.93 11.83 20.29 32.79 12.67 23.94 7.03
AHY39676 (CJ8421_02105)
 33.38 42.36 4.33 1.01 1.91 34.49 34.76 21.33 5.51 3.9 0.86 48.26 0.48 0.86 0.46 27.55 30.54 27.91 5.37 27.84 10.56 13.65 8.12 42.14 50.57 14.8 45.02 86.65 59.95 46.48 24.26 103.92 8.7 43.92 27.27
AHY39684 (CJ8421_02145)
 57.12 865.08 2189.55 3450.4 4857.27 863.09 1037.67 672.05 4684.8 2489.98 3364.32 4123.33 5075.07 3080.15 3233.53 855.76 789.8 556.62 2523.19 837.86 2815.24 5526.88 6206.21 1087.09 6814.57 2161.85 8776.54 6221.23 4016.42 6236.25 4241.95 7330.58 2365.62 3717.02 3570.23
AHY39738 (CJ8421_02425)
 33.05 167.99 180.08 91.5 111.16 658.35 568.56 423.25 396.11 175.7 91.54 386.39 80.09 106.67 129.26 506.5 680.36 432.22 357.97 386.08 300.4 293.39 242.9 534.09 402.47 291.55 397.54 304.63 307.23 128.67 263.35 472.03 174.65 502.94 230.74
AHY39789 (CJ8421_02690)
 221.1 357.2 55.24 32.23 33.48 147.47 178.3 497.12 889.84 310.24 30.25 969.55 28.91 18.62 13.9 146.1 157.28 403.35 943.62 339.39 454.88 601.24 720.5 186.12 480.13 229.96 133.32 764.72 648.65 773.36 558.89 1955.44 330.19 1417.89 332.74
AHY39896 (era)
 450.92 136.81 351.65 190.47 110.7 60.18 68.06 182.97 190.07 127.71 177.15 168.26 157.0 166.75 119.16 49.93 63.45 176.78 191.71 189.6 190.19 103.36 129.01 52.59 164.36 64.14 222.74 154.46 79.61 26.09 213.61 205.28 161.52 313.91 199.27
AHY40027 (CJ8421_03990)
 182.7 150.18 104.99 99.67 108.74 146.38 93.74 261.48 194.24 110.79 83.09 232.14 85.07 86.93 72.08 94.23 150.04 259.52 182.92 249.85 174.62 323.93 245.43 109.39 316.28 195.45 318.71 527.61 168.23 196.56 221.44 215.24 173.83 258.26 199.29
AHY40028 (CJ8421_03995)
 258.53 123.45 123.74 97.1 87.51 187.19 170.94 289.8 226.53 168.55 212.02 228.02 216.01 229.6 189.12 138.25 214.83 294.28 212.08 294.05 200.22 315.87 259.09 151.01 298.61 142.45 286.87 453.38 137.74 136.07 237.7 251.73 293.1 335.93 317.16
AHY40053 (CJ8421_04130)
 182.99 187.31 7.74 12.74 29.49 303.39 257.31 410.57 138.31 107.91 22.52 277.16 23.77 22.76 17.23 327.92 316.38 422.55 114.5 408.11 94.51 395.47 171.93 302.85 428.42 415.43 297.06 636.12 268.92 185.22 259.96 277.86 81.39 115.73 18.51
AHY40073 (CJ8421_04230)
 173.13 30.74 27.06 13.53 10.68 115.2 95.74 114.95 62.9 11.52 8.97 53.02 8.85 8.99 3.55 78.92 116.55 84.5 63.08 96.89 47.88 72.07 54.84 110.54 149.86 51.14 110.35 107.39 69.37 66.77 84.26 146.25 29.35 85.37 28.94
AHY40078 (CJ8421_04255)
 587.62 236.8 451.33 197.92 241.33 446.28 365.94 378.67 346.4 164.8 219.71 359.82 188.31 201.81 142.61 317.93 437.65 455.46 343.01 471.04 444.71 316.58 317.29 361.48 497.95 201.58 480.34 542.41 233.43 175.63 371.39 635.63 319.94 932.4 486.19
AHY40079 (CJ8421_04260)
 677.91 175.35 364.05 140.81 159.48 231.25 194.86 290.64 331.48 142.13 187.02 248.83 168.63 182.22 129.38 159.26 213.04 328.29 322.95 359.47 422.94 224.29 320.81 181.68 262.94 81.21 218.93 275.99 116.66 117.99 300.81 435.81 294.0 696.76 483.16
AHY40105 (CJ8421_04410)
 452.81 296.96 443.68 326.1 132.08 269.27 231.13 210.07 297.1 174.55 221.84 202.56 147.71 231.25 147.86 187.69 282.38 203.37 325.95 222.28 299.46 130.33 266.38 232.34 338.51 275.61 498.98 362.79 382.86 203.31 443.4 445.05 397.45 676.78 415.64
AHY40106 (CJ8421_04415)
 215.97 479.54 343.32 211.06 135.91 191.49 192.36 195.38 237.51 235.65 459.68 280.52 318.36 396.89 209.8 158.52 186.81 189.02 265.14 186.13 249.5 101.75 164.08 162.2 280.34 158.36 359.65 327.19 332.09 76.65 371.72 536.23 311.3 745.76 399.48
AHY40124 (CJ8421_04505)
 64.51 103.05 83.7 60.82 28.83 209.25 209.28 180.66 143.34 61.05 79.31 162.05 62.05 85.29 49.92 174.88 262.22 173.9 140.49 148.34 133.47 131.2 96.28 196.91 129.57 48.19 171.63 213.68 119.64 87.25 122.53 152.97 82.01 206.38 140.1
AHY40162 (CJ8421_04695)
 123.51 49.33 51.15 30.26 23.29 164.04 142.43 92.52 163.25 15.16 13.56 56.55 12.06 13.86 5.89 142.63 184.5 376.35 319.66 383.25 355.05 62.54 116.0 130.65 108.27 29.21 113.55 210.42 55.94 59.33 90.75 166.43 61.22 175.21 67.54
AHY40210 (CJ8421_04980)
 316.98 378.76 35.69 7.91 25.15 214.95 194.9 88.49 72.36 28.1 47.22 76.78 47.68 52.32 25.58 206.68 234.82 115.0 51.28 116.36 90.07 76.08 61.41 231.16 517.73 252.29 422.27 182.62 184.83 215.76 88.75 157.77 37.91 63.71 42.92
AHY40235 (CJ8421_05105)
 48.27 102.43 0.93 0.42 1.26 37.24 49.54 28.19 19.95 2.74 0.71 51.58 1.02 0.81 0.29 38.41 35.45 24.87 15.86 29.06 20.85 25.44 19.96 34.78 66.45 23.55 39.15 82.12 55.47 43.92 27.29 73.41 4.26 20.87 6.75
AHY40248 (CJ8421_05170)
 209.03 136.37 123.88 127.52 79.95 84.95 75.77 383.19 174.28 99.01 43.83 144.78 58.87 62.19 46.87 75.59 80.04 269.12 175.92 257.1 155.56 328.6 246.08 72.85 260.61 219.9 272.98 402.78 147.26 163.01 142.95 128.94 58.68 122.32 77.07
AHY40281 (CJ8421_05345)
 321.42 1197.42 349.83 263.31 385.35 2387.07 2090.77 978.44 1491.08 994.65 122.78 2496.1 112.28 266.94 115.39 2573.45 2483.03 778.82 1447.93 726.45 1164.36 1256.58 1385.15 2190.1 1683.2 677.11 1964.44 1482.77 729.05 1249.84 1322.06 1656.94 746.22 1141.42 556.36
AHY40322 (CJ8421_05550)
 633.54 849.56 702.67 499.58 424.15 383.81 308.55 787.08 475.36 533.27 647.8 791.88 676.57 576.38 540.39 256.18 352.01 720.36 477.22 746.28 528.5 549.9 440.16 341.16 812.07 361.09 1210.88 1068.9 893.09 704.77 974.22 1207.11 1373.48 1247.27 1132.17
AHY40361 (CJ8421_05755)
 109.97 30.11 0.76 0.0 1.86 204.68 285.29 55.94 35.27 3.17 6.53 166.06 1.02 0.0 3.93 245.56 214.06 77.2 37.57 71.9 40.6 65.61 42.89 222.73 256.39 159.68 281.95 442.72 229.28 177.49 52.4 310.21 36.76 125.25 45.35
AHY40381 (CJ8421_05855)
 918.32 3314.23 1178.73 941.24 928.73 4010.97 2615.08 3140.82 2382.6 2437.1 471.99 3494.88 582.58 755.35 292.31 2212.17 3987.07 2872.96 2279.28 2342.09 1682.55 2526.92 1802.95 3502.78 2523.59 2518.04 2871.34 2530.98 1687.31 2555.19 1980.72 2113.45 1340.25 1967.99 1997.85
AHY40411 (CJ8421_06020)
 156.92 246.25 158.76 63.2 75.95 321.37 213.27 494.16 367.78 334.37 54.04 653.56 45.75 76.72 50.7 218.92 351.5 454.91 361.4 367.58 299.75 565.41 337.57 287.32 497.94 402.87 699.77 754.22 438.43 697.11 357.7 419.75 229.84 359.49 378.33
AHY40412 (CJ8421_06025)
 130.79 237.24 16.19 10.66 11.28 168.82 254.32 104.5 178.47 44.26 3.37 246.98 5.1 6.67 5.18 209.16 164.63 118.15 166.29 110.01 169.98 122.46 105.4 206.26 239.2 144.0 165.08 249.73 122.22 161.89 134.21 234.85 58.78 98.96 48.61
AHY40473 (CJ8421_06330)
 697.06 472.13 518.15 383.72 310.5 382.06 304.17 488.6 369.11 336.33 519.68 361.8 421.03 434.03 348.38 261.74 395.32 437.88 390.37 472.9 359.47 342.85 289.37 320.74 453.36 317.89 534.4 471.48 325.56 223.6 537.24 500.72 673.21 780.39 648.31
AHY40502 (CJ8421_06475)
 21.48 58.89 38.1 16.81 12.33 42.93 40.0 343.05 210.4 155.96 57.45 289.08 49.69 93.39 35.75 57.78 67.05 316.05 258.39 337.8 267.32 249.37 244.92 53.16 71.11 0.14 0.05 384.18 163.92 90.2 341.16 348.62 165.16 334.77 257.57
AHY40509 (CJ8421_06520)
 210.49 235.61 157.5 134.2 97.45 178.39 125.75 344.14 258.99 180.25 115.38 353.8 118.34 144.65 118.23 114.39 177.62 283.52 273.21 240.94 215.52 331.24 317.59 140.67 284.95 201.53 397.21 310.61 210.86 177.3 411.36 362.9 302.55 414.85 305.47
AHY40510 (CJ8421_06525)
 282.73 166.14 75.18 49.5 42.51 303.15 237.94 203.37 153.13 65.16 43.43 143.75 37.49 48.48 31.02 248.93 318.2 179.81 153.29 153.88 136.33 186.11 158.32 254.12 130.44 51.06 121.71 119.17 54.88 50.12 269.42 289.74 176.98 265.65 151.69
AHY40520 (CJ8421_06585)
 748.96 157.56 107.55 93.68 66.32 187.27 154.33 180.58 89.48 67.73 106.5 102.8 101.13 96.5 70.68 129.39 192.96 162.85 99.96 154.37 89.75 123.05 106.58 154.64 173.94 60.09 163.45 206.74 128.41 85.16 117.52 103.33 81.08 137.52 85.43
AHY40521 (CJ8421_06590)
 150.84 38.76 93.91 75.63 48.44 115.98 127.25 99.3 95.21 66.85 102.33 59.38 97.93 93.4 64.45 97.02 127.44 98.33 102.68 96.13 94.19 70.63 82.51 102.15 102.57 34.35 98.05 94.06 41.0 10.98 31.21 26.2 26.02 50.34 34.25
AHY40525 (CJ8421_06620)
 745.72 176.77 124.37 111.53 138.69 133.39 153.54 281.41 160.8 214.24 326.18 291.84 351.98 287.22 261.92 104.99 157.52 274.0 204.87 295.77 224.78 231.8 157.12 136.39 314.01 59.51 63.85 592.04 247.95 169.65 278.69 876.17 137.05 422.24 120.65
AHY40526 (CJ8421_06625)
 316.3 28.76 30.93 16.79 15.54 116.89 132.49 140.43 70.28 19.99 19.36 57.3 20.32 21.06 14.59 94.37 147.22 125.88 75.19 121.93 75.35 79.38 55.56 129.66 98.22 16.08 16.24 202.16 67.91 19.39 85.67 306.14 34.82 156.64 27.71
AHY40527 (CJ8421_06630)
 197.09 54.32 33.01 20.63 23.47 180.7 191.52 114.27 86.2 28.51 27.27 54.86 28.71 32.57 20.63 144.7 181.37 120.55 88.44 108.91 81.5 77.61 66.8 185.29 88.39 15.9 48.4 153.99 41.44 12.96 66.76 146.9 30.04 90.08 23.91
AHY40528 (CJ8421_06635)
 226.86 29.86 18.92 9.64 13.26 130.18 137.07 101.14 82.44 24.58 13.91 52.93 13.94 19.04 12.28 100.35 132.83 98.99 92.2 99.12 80.96 64.83 65.38 133.39 131.43 11.86 25.48 237.77 47.6 52.3 284.72 396.51 169.02 189.01 113.75
AHY40531 (CJ8421_06660)
 283.47 126.44 33.52 18.37 22.11 125.25 119.34 87.68 62.83 18.98 33.49 50.28 27.99 28.64 17.42 98.24 125.58 85.61 69.9 79.15 60.93 54.15 46.07 122.18 95.16 23.32 67.11 150.6 43.96 34.96 79.03 123.58 69.43 133.43 59.24
AHY40532 (CJ8421_06665)
 223.35 203.32 48.88 36.1 66.34 154.86 155.44 95.97 89.72 29.99 12.23 98.73 12.98 16.41 9.94 134.27 157.78 106.99 102.62 94.27 86.41 88.0 90.06 169.79 108.57 30.43 71.16 110.23 22.14 29.88 188.87 240.46 147.84 260.01 95.43
AHY40535 (CJ8421_06690)
 234.03 70.87 40.42 35.79 23.21 62.55 62.61 162.88 127.85 30.34 23.15 59.3 20.25 28.04 13.21 47.35 61.28 130.22 86.23 163.18 95.9 37.79 49.55 48.36 116.11 46.01 96.88 139.07 68.31 19.77 89.97 76.8 51.16 89.83 66.63
AHY40540 (CJ8421_06745)
 306.79 269.35 82.01 62.56 65.5 167.37 162.49 367.7 140.62 94.24 118.32 224.73 110.0 111.56 67.04 152.48 167.43 288.4 138.07 300.57 109.47 227.27 111.87 146.53 254.79 250.62 238.47 338.93 204.45 163.77 212.93 309.29 99.62 172.14 125.06
AHY40559 (CJ8421_06855)
 120.29 33.19 39.01 18.02 14.02 65.2 57.6 51.38 36.46 24.67 10.47 57.0 12.16 12.17 8.37 50.58 66.72 50.83 41.41 61.34 45.02 36.36 32.86 57.11 132.01 53.91 96.19 115.98 47.06 49.36 45.36 55.09 16.81 45.51 17.17
AHY40629 (CJ8421_07250)
 45.94 11.15 32.2 12.36 30.71 26.82 28.91 143.03 127.62 34.92 23.89 125.36 31.3 27.1 15.44 20.56 29.32 178.85 113.4 176.33 112.42 128.18 86.86 28.98 337.73 96.29 358.52 455.14 261.37 131.2 235.72 299.56 59.26 223.8 90.4
AHY40633 (CJ8421_07270)
 138.85 19.32 4.31 2.11 4.08 105.29 101.83 67.23 45.67 34.1 21.66 103.64 20.0 21.49 15.97 86.44 121.41 57.1 53.16 48.74 36.28 52.53 49.49 107.92 158.23 28.22 151.2 126.51 37.25 39.94 60.41 102.53 31.17 67.82 21.22
AHY40656 (CJ8421_07395)
 308.11 251.46 195.24 83.56 58.93 123.24 138.35 286.6 509.47 93.9 111.23 364.31 90.53 124.94 67.75 100.86 113.27 328.88 518.79 400.31 423.8 297.27 393.73 120.12 312.31 93.2 314.27 478.93 349.71 213.4 474.28 524.1 194.95 566.83 398.08
AHY40693 (CJ8421_07580)
 241.46 63.93 118.79 100.42 172.81 120.72 102.66 104.88 76.02 48.39 56.92 83.63 55.84 60.52 48.24 108.85 126.86 101.47 84.04 93.06 89.47 144.26 99.64 110.9 77.27 40.7 59.95 85.86 31.67 33.51 139.42 108.56 159.38 144.18 163.1
AHY40700 (CJ8421_07615)
 158.35 123.12 49.39 66.7 52.56 36.72 32.7 50.72 69.19 55.87 48.84 58.99 44.97 57.71 47.44 0.16 36.24 42.63 69.83 33.88 48.03 62.89 73.95 30.57 53.54 16.49 43.3 58.96 23.27 18.8 100.01 75.17 89.83 85.25 72.49
AHY40707 (CJ8421_07665)
 45.78 81.94 1.32 0.57 1.71 34.66 39.44 81.37 27.5 13.86 1.83 93.74 1.49 1.86 2.49 27.33 31.86 67.26 30.24 62.73 63.5 53.1 41.94 30.8 89.77 64.81 56.13 411.25 180.34 104.64 75.01 370.98 23.15 71.93 12.76
AHY40758 (CJ8421_07930)
 175.79 35.79 7.47 2.3 4.93 59.33 59.08 169.06 16.78 35.15 5.52 46.88 5.79 6.76 14.8 49.75 38.35 163.15 19.7 181.26 36.83 169.05 90.26 47.31 137.17 62.16 74.76 187.3 132.1 87.29 56.09 36.66 23.79 48.73 66.05
AHY40840 (CJ8421_08340)
 217.52 505.5 1721.97 724.17 1000.47 867.28 745.25 686.17 638.22 251.84 356.39 763.84 334.06 280.49 202.09 638.09 899.68 800.06 391.27 925.22 561.26 594.13 622.72 652.95 1784.84 681.99 1346.5 2130.2 1137.86 2045.72 987.19 1181.01 1050.36 1702.64 1092.03
AHY40867 (CJ8421_08475)
 562.98 136.78 271.05 205.51 109.04 143.09 121.29 119.34 186.85 65.97 112.23 154.58 104.88 125.94 70.92 111.85 139.14 136.27 184.72 127.63 174.55 144.25 177.6 120.95 147.36 33.47 248.03 110.32 50.83 30.16 280.62 163.04 204.7 206.22 304.44

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)