Heatmap: Cluster_61 (HCCA)

View as: (view raw or zlog-transformed)

View using InCHLib : here ( Experimental feature, still under development)

(Values are normalized against highest expression of the row)

Gene	strain_5001420,control,fromUrine	strain_5001420,fromUrine	ch1034,13h_old_biofilm,biofilm_dispersed	ch1034,13h_old_biofilm,sessile	ch1034,7h_old_biofilm,sessile	ch1034,Log,planktonic	ch1034,Stationary,planktonic	control,fromNasalSwab,fromSwine	dmc1097	dmc1097,control,fromBlood	dmc1097,fromBlood	ekp16,fromSputum	eugenol,fromNasalSwab,fromSwine	fromBlood	fromHospitalPatients	fromRectalSwab	fromUrine	je01	k26,mero_susceptible,fromHospitalPatients	k56,mero_resistant,fromHospitalPatients	kctc2242	kp4,FeLimited,fromRespiratoryTract	kpr1,+CTX	kpr1,+gent	kpr1,+mero	kpr1,+TMP/SMX	kpr1,control	kpr2,+CTX	kpr2,+gent	kpr2,+mero	kpr2,+TMP/SMX	kpr2,control	kps1,+CTX	kps1,+gent	kps1,+mero	kps1,+TMP/SMX	kps1,control	kps2,+CTX	kps2,+gent	kps2,+mero	kps2,+TMP/SMX	kps2,control	mrsn 1319	ms6671	njst258-1,FeLimited,fromUrine	njst258-1,fromUrine	rb011,+mero,mero_resistant	rb011,control,mero_resistant	rb012,+gent,gent_resistant	rb012,control,gent_resistant	rb013,+cip,cip_resistant	rb013,control,cip_resistant	rb039,+cip,cip_resistant	rb039,+mero,mero_susceptible	rb039,control,cip_resistant	rb039,control,mero_susceptible	rb040,+cip,cip_susceptible	rb040,+gent,gent_susceptible	rb040,control,cip_susceptible	rb040,control,gent_susceptible	rb041,+cip,cip_susceptible	rb041,control,cip_susceptible	rb121,+gent,gent_susceptible	rb121,+mero,mero_susceptible	rb121,control,gent_susceptible	rb121,control,mero_susceptible	rb122,+gent,gent_resistant	rb122,control,gent_resistant	rb257,+mero,mero_resistant	rb257,control,mero_resistant	uhkpc05,FeLimited,fromBlood	uhkpc05,fromBlood	uhkpc07	uhkpc07,control,fromUrine	uhkpc07,fromUrine	uhkpc18	uhkpc18,control,fromUrine	uhkpc18,fromUrine	uhkpc33	uhkpc33,control,fromUrine	uhkpc33,fromUrine	uhkpc48	uhkpc48,FeLimited,fromUrine	uhkpc67	uhkpc67,control,fromBlood	uhkpc67,fromBlood	vakpc297	vakpc297,FeLimited,fromUrine
AGT24519 (N559_2848)	0.42	0.44	0.25	0.35	0.31	0.07	0.52	0.25	0.07	0.59	0.65	0.12	0.52	0.2	0.2	0.38	0.21	0.05	0.61	0.52	0.91	0.18	0.42	0.48	1.0	0.4	0.55	0.37	0.45	0.62	0.6	0.43	0.28	0.13	0.45	0.51	0.31	0.32	0.16	0.4	0.5	0.39	0.25	0.25	0.83	0.13	0.9	0.98	0.45	0.38	0.41	0.38	0.36	0.5	0.37	0.42	0.37	0.13	0.29	0.42	0.94	0.39	0.13	0.41	0.34	0.38	0.48	0.46	0.55	0.49	0.41	0.06	0.05	0.45	0.42	0.04	0.49	0.52	0.08	0.48	0.52	0.05	0.22	0.06	0.47	0.44	0.08	0.27
AGT24543 (N559_2874)	0.36	0.31	0.17	0.39	0.6	0.05	0.16	0.32	0.1	0.37	0.3	0.12	0.17	0.15	0.19	0.11	0.17	0.02	0.34	0.38	0.18	0.1	0.19	0.2	1.0	0.21	0.37	0.18	0.26	0.55	0.28	0.26	0.14	0.2	0.22	0.3	0.15	0.22	0.2	0.32	0.38	0.27	0.17	0.15	0.35	0.17	0.9	0.9	0.26	0.23	0.32	0.31	0.3	0.22	0.31	0.16	0.28	0.18	0.27	0.29	0.31	0.2	0.2	0.26	0.2	0.28	0.2	0.18	0.49	0.39	0.51	0.05	0.06	0.85	0.53	0.03	0.38	0.28	0.12	0.62	0.49	0.05	0.2	0.08	0.5	0.34	0.08	0.4

Details

Expression values normalized per gene (using the maximum value, Green cells indicate low expression and red high. (Dark gray cells indicate missing values)