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View using InCHLib : here ( Experimental feature, still under development)
(Showing raw values)
Gene | strain_5001420,control,fromUrine | strain_5001420,fromUrine | ch1034,13h_old_biofilm,biofilm_dispersed | ch1034,13h_old_biofilm,sessile | ch1034,7h_old_biofilm,sessile | ch1034,Log,planktonic | ch1034,Stationary,planktonic | control,fromNasalSwab,fromSwine | dmc1097 | dmc1097,control,fromBlood | dmc1097,fromBlood | ekp16,fromSputum | eugenol,fromNasalSwab,fromSwine | fromBlood | fromHospitalPatients | fromRectalSwab | fromUrine | je01 | k26,mero_susceptible,fromHospitalPatients | k56,mero_resistant,fromHospitalPatients | kctc2242 | kp4,FeLimited,fromRespiratoryTract | kpr1,+CTX | kpr1,+gent | kpr1,+mero | kpr1,+TMP/SMX | kpr1,control | kpr2,+CTX | kpr2,+gent | kpr2,+mero | kpr2,+TMP/SMX | kpr2,control | kps1,+CTX | kps1,+gent | kps1,+mero | kps1,+TMP/SMX | kps1,control | kps2,+CTX | kps2,+gent | kps2,+mero | kps2,+TMP/SMX | kps2,control | mrsn 1319 | ms6671 | njst258-1,FeLimited,fromUrine | njst258-1,fromUrine | rb011,+mero,mero_resistant | rb011,control,mero_resistant | rb012,+gent,gent_resistant | rb012,control,gent_resistant | rb013,+cip,cip_resistant | rb013,control,cip_resistant | rb039,+cip,cip_resistant | rb039,+mero,mero_susceptible | rb039,control,cip_resistant | rb039,control,mero_susceptible | rb040,+cip,cip_susceptible | rb040,+gent,gent_susceptible | rb040,control,cip_susceptible | rb040,control,gent_susceptible | rb041,+cip,cip_susceptible | rb041,control,cip_susceptible | rb121,+gent,gent_susceptible | rb121,+mero,mero_susceptible | rb121,control,gent_susceptible | rb121,control,mero_susceptible | rb122,+gent,gent_resistant | rb122,control,gent_resistant | rb257,+mero,mero_resistant | rb257,control,mero_resistant | uhkpc05,FeLimited,fromBlood | uhkpc05,fromBlood | uhkpc07 | uhkpc07,control,fromUrine | uhkpc07,fromUrine | uhkpc18 | uhkpc18,control,fromUrine | uhkpc18,fromUrine | uhkpc33 | uhkpc33,control,fromUrine | uhkpc33,fromUrine | uhkpc48 | uhkpc48,FeLimited,fromUrine | uhkpc67 | uhkpc67,control,fromBlood | uhkpc67,fromBlood | vakpc297 | vakpc297,FeLimited,fromUrine |
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AGT22509 (N559_0716) | 23.76 | 16.42 | 36.68 | 39.89 | 64.33 | 51.63 | 67.84 | 5.39 | 3.31 | 15.85 | 13.98 | 27.64 | 4.29 | 37.4 | 7.71 | 40.59 | 38.18 | 49.26 | 9.34 | 11.55 | 19.88 | 10.16 | 36.58 | 51.03 | 43.37 | 28.15 | 42.84 | 23.84 | 39.72 | 49.51 | 41.69 | 33.38 | 34.75 | 50.54 | 42.62 | 38.42 | 32.76 | 34.14 | 40.04 | 50.26 | 40.74 | 32.31 | 23.46 | 7.18 | 7.59 | 20.61 | 39.74 | 47.19 | 39.72 | 44.61 | 27.43 | 29.97 | 26.99 | 36.62 | 28.99 | 24.19 | 36.21 | 59.6 | 22.17 | 43.68 | 31.43 | 28.15 | 50.54 | 40.42 | 51.31 | 25.57 | 51.03 | 54.95 | 39.61 | 25.15 | 12.59 | 1.5 | 4.79 | 30.87 | 24.14 | 9.82 | 22.48 | 16.82 | 4.51 | 19.25 | 13.24 | 15.19 | 13.57 | 13.4 | 19.09 | 13.31 | 0.49 | 9.91 |
AGT25716 (N559_4090) | 13.72 | 11.7 | 23.97 | 13.26 | 9.27 | 19.49 | 16.25 | 8.56 | 6.72 | 20.55 | 13.44 | 31.37 | 26.4 | 42.72 | 37.31 | 133.37 | 48.08 | 3.46 | 45.36 | 47.24 | 0.0 | 2.83 | 38.1 | 68.19 | 75.41 | 27.64 | 58.48 | 32.22 | 64.68 | 84.99 | 30.49 | 36.63 | 24.42 | 26.58 | 60.63 | 7.74 | 49.56 | 39.09 | 22.45 | 32.95 | 31.26 | 34.48 | 39.68 | 0.66 | 8.9 | 40.79 | 60.33 | 37.04 | 64.68 | 39.29 | 6.36 | 6.46 | 12.0 | 36.38 | 10.87 | 24.39 | 10.32 | 27.35 | 7.76 | 58.75 | 5.99 | 7.85 | 26.58 | 19.77 | 92.04 | 24.01 | 68.19 | 111.62 | 67.99 | 39.17 | 9.8 | 0.0 | 0.0 | 36.75 | 8.2 | 5.54 | 14.1 | 17.99 | 0.0 | 11.95 | 12.36 | 11.44 | 8.78 | 36.05 | 13.75 | 15.09 | 24.9 | 17.08 |
Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)