Heatmap: Cluster_55 (HCCA)

View as: (view raw or zlog-transformed)

View using InCHLib : here ( Experimental feature, still under development)

(Values are normalized against highest expression of the row)

Gene	strain_5001420,control,fromUrine	strain_5001420,fromUrine	ch1034,13h_old_biofilm,biofilm_dispersed	ch1034,13h_old_biofilm,sessile	ch1034,7h_old_biofilm,sessile	ch1034,Log,planktonic	ch1034,Stationary,planktonic	control,fromNasalSwab,fromSwine	dmc1097	dmc1097,control,fromBlood	dmc1097,fromBlood	ekp16,fromSputum	eugenol,fromNasalSwab,fromSwine	fromBlood	fromHospitalPatients	fromRectalSwab	fromUrine	je01	k26,mero_susceptible,fromHospitalPatients	k56,mero_resistant,fromHospitalPatients	kctc2242	kp4,FeLimited,fromRespiratoryTract	kpr1,+CTX	kpr1,+gent	kpr1,+mero	kpr1,+TMP/SMX	kpr1,control	kpr2,+CTX	kpr2,+gent	kpr2,+mero	kpr2,+TMP/SMX	kpr2,control	kps1,+CTX	kps1,+gent	kps1,+mero	kps1,+TMP/SMX	kps1,control	kps2,+CTX	kps2,+gent	kps2,+mero	kps2,+TMP/SMX	kps2,control	mrsn 1319	ms6671	njst258-1,FeLimited,fromUrine	njst258-1,fromUrine	rb011,+mero,mero_resistant	rb011,control,mero_resistant	rb012,+gent,gent_resistant	rb012,control,gent_resistant	rb013,+cip,cip_resistant	rb013,control,cip_resistant	rb039,+cip,cip_resistant	rb039,+mero,mero_susceptible	rb039,control,cip_resistant	rb039,control,mero_susceptible	rb040,+cip,cip_susceptible	rb040,+gent,gent_susceptible	rb040,control,cip_susceptible	rb040,control,gent_susceptible	rb041,+cip,cip_susceptible	rb041,control,cip_susceptible	rb121,+gent,gent_susceptible	rb121,+mero,mero_susceptible	rb121,control,gent_susceptible	rb121,control,mero_susceptible	rb122,+gent,gent_resistant	rb122,control,gent_resistant	rb257,+mero,mero_resistant	rb257,control,mero_resistant	uhkpc05,FeLimited,fromBlood	uhkpc05,fromBlood	uhkpc07	uhkpc07,control,fromUrine	uhkpc07,fromUrine	uhkpc18	uhkpc18,control,fromUrine	uhkpc18,fromUrine	uhkpc33	uhkpc33,control,fromUrine	uhkpc33,fromUrine	uhkpc48	uhkpc48,FeLimited,fromUrine	uhkpc67	uhkpc67,control,fromBlood	uhkpc67,fromBlood	vakpc297	vakpc297,FeLimited,fromUrine
AGT22509 (N559_0716)	0.35	0.24	0.54	0.59	0.95	0.76	1.0	0.08	0.05	0.23	0.21	0.41	0.06	0.55	0.11	0.6	0.56	0.73	0.14	0.17	0.29	0.15	0.54	0.75	0.64	0.41	0.63	0.35	0.59	0.73	0.61	0.49	0.51	0.75	0.63	0.57	0.48	0.5	0.59	0.74	0.6	0.48	0.35	0.11	0.11	0.3	0.59	0.7	0.59	0.66	0.4	0.44	0.4	0.54	0.43	0.36	0.53	0.88	0.33	0.64	0.46	0.41	0.75	0.6	0.76	0.38	0.75	0.81	0.58	0.37	0.19	0.02	0.07	0.46	0.36	0.14	0.33	0.25	0.07	0.28	0.2	0.22	0.2	0.2	0.28	0.2	0.01	0.15
AGT25716 (N559_4090)	0.1	0.09	0.18	0.1	0.07	0.15	0.12	0.06	0.05	0.15	0.1	0.24	0.2	0.32	0.28	1.0	0.36	0.03	0.34	0.35	0.0	0.02	0.29	0.51	0.57	0.21	0.44	0.24	0.48	0.64	0.23	0.27	0.18	0.2	0.45	0.06	0.37	0.29	0.17	0.25	0.23	0.26	0.3	0.0	0.07	0.31	0.45	0.28	0.48	0.29	0.05	0.05	0.09	0.27	0.08	0.18	0.08	0.21	0.06	0.44	0.04	0.06	0.2	0.15	0.69	0.18	0.51	0.84	0.51	0.29	0.07	0.0	0.0	0.28	0.06	0.04	0.11	0.13	0.0	0.09	0.09	0.09	0.07	0.27	0.1	0.11	0.19	0.13

Details

Expression values normalized per gene (using the maximum value, Green cells indicate low expression and red high. (Dark gray cells indicate missing values)