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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | strain_5001420,control,fromUrine | strain_5001420,fromUrine | ch1034,13h_old_biofilm,biofilm_dispersed | ch1034,13h_old_biofilm,sessile | ch1034,7h_old_biofilm,sessile | ch1034,Log,planktonic | ch1034,Stationary,planktonic | control,fromNasalSwab,fromSwine | dmc1097 | dmc1097,control,fromBlood | dmc1097,fromBlood | ekp16,fromSputum | eugenol,fromNasalSwab,fromSwine | fromBlood | fromHospitalPatients | fromRectalSwab | fromUrine | je01 | k26,mero_susceptible,fromHospitalPatients | k56,mero_resistant,fromHospitalPatients | kctc2242 | kp4,FeLimited,fromRespiratoryTract | kpr1,+CTX | kpr1,+gent | kpr1,+mero | kpr1,+TMP/SMX | kpr1,control | kpr2,+CTX | kpr2,+gent | kpr2,+mero | kpr2,+TMP/SMX | kpr2,control | kps1,+CTX | kps1,+gent | kps1,+mero | kps1,+TMP/SMX | kps1,control | kps2,+CTX | kps2,+gent | kps2,+mero | kps2,+TMP/SMX | kps2,control | mrsn 1319 | ms6671 | njst258-1,FeLimited,fromUrine | njst258-1,fromUrine | rb011,+mero,mero_resistant | rb011,control,mero_resistant | rb012,+gent,gent_resistant | rb012,control,gent_resistant | rb013,+cip,cip_resistant | rb013,control,cip_resistant | rb039,+cip,cip_resistant | rb039,+mero,mero_susceptible | rb039,control,cip_resistant | rb039,control,mero_susceptible | rb040,+cip,cip_susceptible | rb040,+gent,gent_susceptible | rb040,control,cip_susceptible | rb040,control,gent_susceptible | rb041,+cip,cip_susceptible | rb041,control,cip_susceptible | rb121,+gent,gent_susceptible | rb121,+mero,mero_susceptible | rb121,control,gent_susceptible | rb121,control,mero_susceptible | rb122,+gent,gent_resistant | rb122,control,gent_resistant | rb257,+mero,mero_resistant | rb257,control,mero_resistant | uhkpc05,FeLimited,fromBlood | uhkpc05,fromBlood | uhkpc07 | uhkpc07,control,fromUrine | uhkpc07,fromUrine | uhkpc18 | uhkpc18,control,fromUrine | uhkpc18,fromUrine | uhkpc33 | uhkpc33,control,fromUrine | uhkpc33,fromUrine | uhkpc48 | uhkpc48,FeLimited,fromUrine | uhkpc67 | uhkpc67,control,fromBlood | uhkpc67,fromBlood | vakpc297 | vakpc297,FeLimited,fromUrine |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AGT22728 (N559_0941) | 0.49 | 0.49 | 0.01 | 0.49 | -0.03 | -0.74 | 0.88 | -0.3 | -2.95 | 0.52 | 0.71 | -0.94 | 0.24 | -0.09 | 1.27 | -0.31 | 0.26 | - | 1.15 | 0.31 | 1.4 | -1.92 | -0.98 | -0.82 | 1.36 | -0.99 | -0.16 | -0.53 | -0.69 | -0.09 | -1.32 | -0.82 | -0.02 | -0.13 | -0.27 | 0.63 | -0.68 | -0.29 | -0.55 | -0.5 | 0.13 | -0.54 | 0.05 | -1.76 | -1.49 | -0.75 | 1.16 | 0.88 | -0.69 | -0.81 | -1.91 | -1.47 | -1.51 | 0.12 | -1.63 | -1.07 | -0.85 | 0.13 | -1.8 | -0.52 | -1.66 | -1.4 | -0.13 | 0.43 | -0.35 | -0.06 | -0.82 | -0.99 | -0.07 | -0.03 | -0.27 | -2.88 | -7.0 | -0.12 | -0.07 | -2.3 | -0.74 | -0.9 | -0.56 | 0.56 | 0.71 | 2.48 | 3.13 | -1.37 | -1.32 | -0.91 | -2.8 | -1.67 |
AGT22729 (FimH) | 1.52 | 1.38 | -0.42 | -0.46 | -0.53 | -1.98 | -0.39 | 0.2 | -5.0 | 1.1 | 1.68 | -1.15 | 0.29 | -0.4 | 0.96 | -0.7 | -0.77 | -6.25 | -0.25 | -0.38 | 0.65 | -2.31 | -1.87 | -1.85 | 0.42 | -1.85 | -0.94 | -1.38 | -1.41 | -1.15 | -1.74 | -1.34 | -0.67 | -0.91 | -1.59 | -0.08 | -1.11 | -0.66 | -1.7 | -1.1 | 0.09 | -1.22 | -0.87 | -1.04 | -2.43 | -1.84 | 0.27 | 0.19 | -1.41 | -1.25 | -2.61 | -2.36 | -2.3 | -0.85 | -1.86 | -1.71 | -1.44 | -0.85 | -2.35 | -1.58 | -1.69 | -1.65 | -0.91 | -0.59 | -0.72 | -0.59 | -1.85 | -1.83 | -1.06 | -0.9 | 0.3 | -4.55 | -2.06 | 0.9 | 0.75 | -2.95 | -2.08 | -1.95 | -2.07 | 1.63 | 1.49 | 3.06 | 4.32 | -2.8 | -2.2 | -1.79 | -5.43 | -2.64 |
AGT22730 (N559_0943) | 1.0 | 0.87 | -0.09 | -0.8 | -0.77 | -2.14 | -0.73 | 0.25 | -2.21 | 0.91 | 1.19 | -1.4 | 0.19 | 0.58 | 0.75 | -1.21 | -0.44 | -8.17 | -2.0 | -2.29 | -0.16 | -2.16 | -3.08 | -3.39 | -0.13 | -2.72 | -1.86 | -2.34 | -2.93 | -3.45 | -3.78 | -2.76 | -0.58 | -1.61 | -2.15 | -0.77 | -1.18 | -1.38 | -2.15 | -1.04 | -0.34 | -1.48 | -2.0 | -1.05 | -3.62 | -2.1 | -0.24 | -0.55 | -2.93 | -2.23 | -6.18 | -4.13 | -3.57 | -1.16 | -3.46 | -2.79 | -2.31 | -1.43 | -3.56 | -1.81 | -3.11 | -3.26 | -1.61 | -0.85 | -0.41 | -0.7 | -3.39 | -2.78 | -2.83 | -3.04 | 0.15 | -4.2 | -2.41 | 0.17 | 0.1 | -2.85 | -2.55 | -2.18 | -1.88 | 1.34 | 1.12 | 4.45 | 4.48 | -2.67 | -2.9 | -2.66 | -3.01 | -3.24 |
AGT22731 (FimF) | 1.85 | 1.75 | 0.58 | -0.52 | -0.32 | -1.94 | -1.02 | 1.17 | - | 1.57 | 1.84 | -1.69 | 1.18 | -0.12 | 1.19 | -3.06 | -1.78 | - | -2.04 | -2.16 | 0.74 | -2.16 | -3.79 | -4.4 | -0.65 | -2.84 | -2.44 | -2.16 | -2.09 | -2.36 | -2.86 | -3.1 | -0.11 | -0.88 | -2.03 | -1.4 | -1.03 | -1.54 | -1.93 | -1.2 | -0.98 | -1.53 | -1.83 | -0.47 | -3.61 | -2.65 | -0.67 | -1.01 | -2.09 | -2.85 | -4.27 | -4.94 | -3.23 | -1.32 | -3.87 | -2.9 | -2.33 | -1.13 | -4.38 | -1.57 | -2.96 | -3.23 | -0.88 | -1.22 | -0.32 | -0.89 | -4.4 | -3.97 | -1.5 | -4.05 | 0.71 | -3.49 | -5.4 | 0.88 | 1.02 | -3.95 | -3.04 | -2.86 | - | 1.7 | 1.69 | 2.19 | 4.82 | -3.1 | -2.25 | -2.45 | - | -3.36 |
AGT22732 (FimD) | 0.85 | 0.65 | 1.08 | 0.18 | 0.16 | -0.81 | 0.1 | 0.66 | -1.72 | 0.68 | 0.88 | -1.96 | 0.87 | 0.33 | 0.79 | -1.3 | -0.08 | -7.07 | -0.71 | -1.09 | 0.44 | -3.07 | -1.84 | -1.99 | 0.34 | -1.64 | -0.93 | -0.92 | -1.11 | -1.19 | -1.95 | -1.26 | 0.06 | 0.13 | -1.28 | 0.04 | -0.73 | -0.77 | -1.39 | -0.47 | 0.19 | -0.97 | -1.42 | -0.47 | -3.39 | -1.85 | 0.25 | 0.21 | -1.11 | -1.12 | -2.89 | -2.45 | -2.29 | -0.78 | -2.37 | -1.48 | -1.73 | -0.69 | -2.94 | -1.57 | -1.5 | -2.02 | 0.13 | 0.14 | -0.14 | -0.42 | -1.99 | -1.95 | -1.2 | -1.36 | -0.33 | -3.57 | -4.42 | -0.13 | -0.1 | -4.18 | -2.78 | -2.61 | -3.42 | 0.65 | 0.95 | 4.23 | 3.63 | -2.96 | -2.9 | -2.86 | -3.51 | -3.29 |
AGT22733 (FimC) | 0.21 | 0.31 | 0.96 | -0.31 | -0.1 | -0.99 | -1.63 | 0.66 | -1.47 | 0.18 | 0.7 | -2.84 | 0.87 | 0.19 | 0.11 | -1.91 | -0.43 | -5.68 | -4.78 | -5.03 | -0.25 | -3.46 | -4.86 | -5.07 | -1.53 | -2.99 | -3.1 | -2.72 | -2.75 | -3.57 | -4.49 | -3.6 | -0.07 | -1.02 | -2.5 | -1.69 | -1.36 | -1.87 | -3.02 | -0.73 | -1.2 | -1.64 | -1.54 | -0.01 | -7.55 | -3.13 | -1.13 | -1.57 | -2.75 | -3.4 | -7.95 | -5.4 | -3.79 | -1.24 | -3.96 | -2.89 | -3.46 | -2.22 | -4.33 | -2.02 | -3.18 | -3.82 | -1.02 | -0.63 | -0.51 | -1.08 | -5.07 | -4.76 | -3.44 | -3.81 | -0.63 | -3.55 | -4.72 | -0.54 | -0.45 | -3.46 | -5.19 | -4.48 | -4.81 | 0.32 | 0.59 | 5.33 | 3.69 | -3.42 | -4.55 | -4.54 | -5.11 | -5.26 |
AGT22734 (N559_0947) | 0.17 | -0.09 | -0.24 | -1.51 | -1.01 | -2.2 | -2.56 | -0.17 | -2.57 | -0.04 | 0.11 | -3.33 | 0.03 | -0.24 | -0.41 | -3.04 | -0.92 | -7.42 | -6.32 | -6.55 | -1.74 | -4.87 | -6.87 | -7.37 | -3.02 | -3.55 | -4.47 | -3.2 | -3.4 | -5.74 | -7.64 | -4.01 | -0.7 | -0.9 | -3.18 | -2.43 | -1.66 | -2.41 | -3.11 | -1.26 | -1.69 | -2.37 | -1.85 | -1.94 | -8.12 | -4.52 | -2.63 | -2.65 | -3.4 | -3.27 | - | -6.51 | -5.77 | -1.94 | -5.52 | -3.88 | -5.14 | -3.03 | -4.84 | -2.69 | -4.05 | -4.81 | -0.9 | -1.6 | -0.76 | -1.78 | -7.37 | -8.65 | -5.59 | -4.24 | -1.04 | -3.89 | -4.85 | -0.63 | -0.75 | -4.4 | -6.05 | -5.48 | -3.35 | 0.04 | 0.2 | 5.84 | 3.0 | -4.64 | -5.17 | -5.39 | -3.23 | -5.57 |
AGT22735 (N559_0948) | 0.95 | 0.91 | 0.88 | 0.61 | 1.31 | -1.17 | -0.95 | 1.66 | -3.21 | 0.45 | 0.89 | -1.88 | 1.49 | 1.77 | 1.54 | -1.68 | 0.31 | -6.85 | -7.08 | -6.16 | -4.31 | -3.69 | -6.51 | -6.78 | -2.19 | -1.63 | -3.01 | -2.1 | -2.64 | -6.2 | -6.04 | -3.16 | 1.46 | 0.09 | -1.56 | -0.41 | 0.39 | -0.75 | -1.72 | 0.62 | 0.09 | 0.19 | -0.35 | 2.1 | -7.27 | -5.84 | -0.23 | -0.07 | -2.64 | -2.54 | -8.01 | -8.51 | -4.28 | -0.58 | -4.12 | -1.3 | -3.1 | -2.02 | -3.54 | -0.59 | -2.54 | -2.68 | 0.09 | 0.12 | 1.11 | 0.94 | -6.78 | -7.73 | -2.44 | -1.92 | -0.17 | -4.46 | -6.32 | 0.14 | 0.07 | -9.12 | -5.64 | -5.8 | -5.85 | 1.1 | 1.21 | 3.03 | 3.93 | -6.59 | -4.59 | -4.94 | -6.03 | -5.86 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.