Heatmap: Cluster_58 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
strain_5001420,control,fromUrine
strain_5001420,fromUrine
ch1034,13h_old_biofilm,biofilm_dispersed
ch1034,13h_old_biofilm,sessile
ch1034,7h_old_biofilm,sessile
ch1034,Log,planktonic
ch1034,Stationary,planktonic
control,fromNasalSwab,fromSwine
dmc1097
dmc1097,control,fromBlood
dmc1097,fromBlood
ekp16,fromSputum
eugenol,fromNasalSwab,fromSwine
fromBlood
fromHospitalPatients
fromRectalSwab
fromUrine
je01
k26,mero_susceptible,fromHospitalPatients
k56,mero_resistant,fromHospitalPatients
kctc2242
kp4,FeLimited,fromRespiratoryTract
kpr1,+CTX
kpr1,+gent
kpr1,+mero
kpr1,+TMP/SMX
kpr1,control
kpr2,+CTX
kpr2,+gent
kpr2,+mero
kpr2,+TMP/SMX
kpr2,control
kps1,+CTX
kps1,+gent
kps1,+mero
kps1,+TMP/SMX
kps1,control
kps2,+CTX
kps2,+gent
kps2,+mero
kps2,+TMP/SMX
kps2,control
mrsn 1319
ms6671
njst258-1,FeLimited,fromUrine
njst258-1,fromUrine
rb011,+mero,mero_resistant
rb011,control,mero_resistant
rb012,+gent,gent_resistant
rb012,control,gent_resistant
rb013,+cip,cip_resistant
rb013,control,cip_resistant
rb039,+cip,cip_resistant
rb039,+mero,mero_susceptible
rb039,control,cip_resistant
rb039,control,mero_susceptible
rb040,+cip,cip_susceptible
rb040,+gent,gent_susceptible
rb040,control,cip_susceptible
rb040,control,gent_susceptible
rb041,+cip,cip_susceptible
rb041,control,cip_susceptible
rb121,+gent,gent_susceptible
rb121,+mero,mero_susceptible
rb121,control,gent_susceptible
rb121,control,mero_susceptible
rb122,+gent,gent_resistant
rb122,control,gent_resistant
rb257,+mero,mero_resistant
rb257,control,mero_resistant
uhkpc05,FeLimited,fromBlood
uhkpc05,fromBlood
uhkpc07
uhkpc07,control,fromUrine
uhkpc07,fromUrine
uhkpc18
uhkpc18,control,fromUrine
uhkpc18,fromUrine
uhkpc33
uhkpc33,control,fromUrine
uhkpc33,fromUrine
uhkpc48
uhkpc48,FeLimited,fromUrine
uhkpc67
uhkpc67,control,fromBlood
uhkpc67,fromBlood
vakpc297
vakpc297,FeLimited,fromUrine
AGT22728 (N559_0941)
0.49 0.49 0.01 0.49 -0.03 -0.74 0.88 -0.3 -2.95 0.52 0.71 -0.94 0.24 -0.09 1.27 -0.31 0.26 - 1.15 0.31 1.4 -1.92 -0.98 -0.82 1.36 -0.99 -0.16 -0.53 -0.69 -0.09 -1.32 -0.82 -0.02 -0.13 -0.27 0.63 -0.68 -0.29 -0.55 -0.5 0.13 -0.54 0.05 -1.76 -1.49 -0.75 1.16 0.88 -0.69 -0.81 -1.91 -1.47 -1.51 0.12 -1.63 -1.07 -0.85 0.13 -1.8 -0.52 -1.66 -1.4 -0.13 0.43 -0.35 -0.06 -0.82 -0.99 -0.07 -0.03 -0.27 -2.88 -7.0 -0.12 -0.07 -2.3 -0.74 -0.9 -0.56 0.56 0.71 2.48 3.13 -1.37 -1.32 -0.91 -2.8 -1.67
AGT22729 (FimH)
1.52 1.38 -0.42 -0.46 -0.53 -1.98 -0.39 0.2 -5.0 1.1 1.68 -1.15 0.29 -0.4 0.96 -0.7 -0.77 -6.25 -0.25 -0.38 0.65 -2.31 -1.87 -1.85 0.42 -1.85 -0.94 -1.38 -1.41 -1.15 -1.74 -1.34 -0.67 -0.91 -1.59 -0.08 -1.11 -0.66 -1.7 -1.1 0.09 -1.22 -0.87 -1.04 -2.43 -1.84 0.27 0.19 -1.41 -1.25 -2.61 -2.36 -2.3 -0.85 -1.86 -1.71 -1.44 -0.85 -2.35 -1.58 -1.69 -1.65 -0.91 -0.59 -0.72 -0.59 -1.85 -1.83 -1.06 -0.9 0.3 -4.55 -2.06 0.9 0.75 -2.95 -2.08 -1.95 -2.07 1.63 1.49 3.06 4.32 -2.8 -2.2 -1.79 -5.43 -2.64
AGT22730 (N559_0943)
1.0 0.87 -0.09 -0.8 -0.77 -2.14 -0.73 0.25 -2.21 0.91 1.19 -1.4 0.19 0.58 0.75 -1.21 -0.44 -8.17 -2.0 -2.29 -0.16 -2.16 -3.08 -3.39 -0.13 -2.72 -1.86 -2.34 -2.93 -3.45 -3.78 -2.76 -0.58 -1.61 -2.15 -0.77 -1.18 -1.38 -2.15 -1.04 -0.34 -1.48 -2.0 -1.05 -3.62 -2.1 -0.24 -0.55 -2.93 -2.23 -6.18 -4.13 -3.57 -1.16 -3.46 -2.79 -2.31 -1.43 -3.56 -1.81 -3.11 -3.26 -1.61 -0.85 -0.41 -0.7 -3.39 -2.78 -2.83 -3.04 0.15 -4.2 -2.41 0.17 0.1 -2.85 -2.55 -2.18 -1.88 1.34 1.12 4.45 4.48 -2.67 -2.9 -2.66 -3.01 -3.24
AGT22731 (FimF)
1.85 1.75 0.58 -0.52 -0.32 -1.94 -1.02 1.17 - 1.57 1.84 -1.69 1.18 -0.12 1.19 -3.06 -1.78 - -2.04 -2.16 0.74 -2.16 -3.79 -4.4 -0.65 -2.84 -2.44 -2.16 -2.09 -2.36 -2.86 -3.1 -0.11 -0.88 -2.03 -1.4 -1.03 -1.54 -1.93 -1.2 -0.98 -1.53 -1.83 -0.47 -3.61 -2.65 -0.67 -1.01 -2.09 -2.85 -4.27 -4.94 -3.23 -1.32 -3.87 -2.9 -2.33 -1.13 -4.38 -1.57 -2.96 -3.23 -0.88 -1.22 -0.32 -0.89 -4.4 -3.97 -1.5 -4.05 0.71 -3.49 -5.4 0.88 1.02 -3.95 -3.04 -2.86 - 1.7 1.69 2.19 4.82 -3.1 -2.25 -2.45 - -3.36
AGT22732 (FimD)
0.85 0.65 1.08 0.18 0.16 -0.81 0.1 0.66 -1.72 0.68 0.88 -1.96 0.87 0.33 0.79 -1.3 -0.08 -7.07 -0.71 -1.09 0.44 -3.07 -1.84 -1.99 0.34 -1.64 -0.93 -0.92 -1.11 -1.19 -1.95 -1.26 0.06 0.13 -1.28 0.04 -0.73 -0.77 -1.39 -0.47 0.19 -0.97 -1.42 -0.47 -3.39 -1.85 0.25 0.21 -1.11 -1.12 -2.89 -2.45 -2.29 -0.78 -2.37 -1.48 -1.73 -0.69 -2.94 -1.57 -1.5 -2.02 0.13 0.14 -0.14 -0.42 -1.99 -1.95 -1.2 -1.36 -0.33 -3.57 -4.42 -0.13 -0.1 -4.18 -2.78 -2.61 -3.42 0.65 0.95 4.23 3.63 -2.96 -2.9 -2.86 -3.51 -3.29
AGT22733 (FimC)
0.21 0.31 0.96 -0.31 -0.1 -0.99 -1.63 0.66 -1.47 0.18 0.7 -2.84 0.87 0.19 0.11 -1.91 -0.43 -5.68 -4.78 -5.03 -0.25 -3.46 -4.86 -5.07 -1.53 -2.99 -3.1 -2.72 -2.75 -3.57 -4.49 -3.6 -0.07 -1.02 -2.5 -1.69 -1.36 -1.87 -3.02 -0.73 -1.2 -1.64 -1.54 -0.01 -7.55 -3.13 -1.13 -1.57 -2.75 -3.4 -7.95 -5.4 -3.79 -1.24 -3.96 -2.89 -3.46 -2.22 -4.33 -2.02 -3.18 -3.82 -1.02 -0.63 -0.51 -1.08 -5.07 -4.76 -3.44 -3.81 -0.63 -3.55 -4.72 -0.54 -0.45 -3.46 -5.19 -4.48 -4.81 0.32 0.59 5.33 3.69 -3.42 -4.55 -4.54 -5.11 -5.26
AGT22734 (N559_0947)
0.17 -0.09 -0.24 -1.51 -1.01 -2.2 -2.56 -0.17 -2.57 -0.04 0.11 -3.33 0.03 -0.24 -0.41 -3.04 -0.92 -7.42 -6.32 -6.55 -1.74 -4.87 -6.87 -7.37 -3.02 -3.55 -4.47 -3.2 -3.4 -5.74 -7.64 -4.01 -0.7 -0.9 -3.18 -2.43 -1.66 -2.41 -3.11 -1.26 -1.69 -2.37 -1.85 -1.94 -8.12 -4.52 -2.63 -2.65 -3.4 -3.27 - -6.51 -5.77 -1.94 -5.52 -3.88 -5.14 -3.03 -4.84 -2.69 -4.05 -4.81 -0.9 -1.6 -0.76 -1.78 -7.37 -8.65 -5.59 -4.24 -1.04 -3.89 -4.85 -0.63 -0.75 -4.4 -6.05 -5.48 -3.35 0.04 0.2 5.84 3.0 -4.64 -5.17 -5.39 -3.23 -5.57
AGT22735 (N559_0948)
0.95 0.91 0.88 0.61 1.31 -1.17 -0.95 1.66 -3.21 0.45 0.89 -1.88 1.49 1.77 1.54 -1.68 0.31 -6.85 -7.08 -6.16 -4.31 -3.69 -6.51 -6.78 -2.19 -1.63 -3.01 -2.1 -2.64 -6.2 -6.04 -3.16 1.46 0.09 -1.56 -0.41 0.39 -0.75 -1.72 0.62 0.09 0.19 -0.35 2.1 -7.27 -5.84 -0.23 -0.07 -2.64 -2.54 -8.01 -8.51 -4.28 -0.58 -4.12 -1.3 -3.1 -2.02 -3.54 -0.59 -2.54 -2.68 0.09 0.12 1.11 0.94 -6.78 -7.73 -2.44 -1.92 -0.17 -4.46 -6.32 0.14 0.07 -9.12 -5.64 -5.8 -5.85 1.1 1.21 3.03 3.93 -6.59 -4.59 -4.94 -6.03 -5.86

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.