Heatmap: Cluster_30 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
10403S,Log
10403S,WT
10403S,LMRG 00730 deleted
10403S,delta sigB,Log
10403S,WT,Log
10403S,virR deleted,Log
10403S,WT,Bile
10403S,WT,ctrl
10403S,delta sigB,Bile
10403S,delta sigB,ctrl
10403S
ATCC 19115,Lactic acid(1h)
ATCC 19115,ctrl
WT
EGD
ATCC 19115,linalool
EDGe,37C(20min)
EDGe,20C(20min)
EDGe,20C(3h)
EDGe,Light
EDGe,Dark
EGD,MQ Water(0h)
EGD,MW Water(10min)
EGD,0.1875% L.plantarum(10min)
EGD,MQ Water(1h)
EGD,0.1875% L.plantarum(1h)
EGD,0.1875% L.plantarum+1mg/ml Pro-K(1h)
EGD,MQ Water(at 0h)
EGD,MQ Water(at 3h)
EGD,Ampicillin 0.03g/ml(at 3h)
EGD,Tetracycline 0.035g/ml(at 3h)
EGD,Gentamicin 0.3g/ml(at 3h)
EGD,Co-trimoxazole 0.2g/ml(at 3h)
EGDe
EGD,WT
37C,Late-Log
EGD,delta Lmo1408
EGD,delta Lmo0422
EGD,delta Lmo0599
EGDe,Lincomycin 0.25g/ml
EGDe,Chloramphenicol 0.4g/ml
EGDe,Erythromycin 0.03125g/ml
EGDe,Kanamycin 0.5g/ml
EGDe,Ofloxacin 2g/ml
EGDe,Ampicillin 1g/ml
EGDe,Bacitracin 8g/ml
EGDe,ctrl
EGDe,Lincomycin 0.5g/ml
EGDe,WT
EGDe,delta lftR
EGDe,37C,Late-Log
EGDe,WT,Light
EGDe,WT,Dark
EGDe,Light
EGDe,Dark
FFH,30C
FFH,10C
H1,37C,Late-Log
H2,37C,Late-Log
H3,37C,Late-Log
H5,37C,Late-Log
H6,37C,Late-Log
H7,37C,Late-Log
H8,37C,Late-Log
H10,37C,Late-Log
H11,37C,Late-Log
H17,37C,Late-Log
H19,37C,Late-Log
H27,37C,Late-Log
H28,37C,Late-Log
H31,37C,Late-Log
H32,37C,Late-Log
568
H7858,Log
H7858,WT,Bile
H7858,WT,ctrl
H7858,delta sigB,Bile
H7858,delta sigB,ctrl
LL195,ctrl
LL195,acid
Lm1,4C,Late-Stationary
Lm1,4C,Late-Log
Lm1,4C,Log
Lm1,WT,4C,Log
Lm1,4C,Lag
Lm1,20C,Late-Stationary
Lm1,20C,Late-Log
Lm1,20C,Log
Lm1,WT,20C,Log
Lm1,20C,Lag
LO28,37C,Late-Log
N12-0605,ctrl
N12-0605,acid
N13-0047,ctrl
N13-0047,acid
N13-1507,ctrl
N13-1507,acid
rli47,Log
WT,Log
Scott A,37C,Late-Log
AKI48673 (L2625_00741)
-3.08 -2.34 -2.81 -2.45 -3.23 -3.44 -1.77 -1.77 -2.04 -1.83 -1.89 2.57 -0.3 -0.9 -1.37 -0.46 -1.08 -1.51 -1.44 -1.55 -1.67 -1.7 -1.51 -1.48 -1.46 -1.58 -1.81 -1.32 -0.9 -1.21 -1.41 -0.62 -0.88 -2.72 -0.99 -1.0 -1.17 -1.52 -0.97 -1.56 -2.02 -1.75 -1.95 -2.17 -1.92 -1.62 -1.67 -1.19 -1.13 5.45 -1.35 -1.55 -1.33 -1.51 -1.84 -0.85 -1.05 -0.89 0.58 0.48 0.29 0.81 0.58 -1.17 1.18 -0.89 -0.16 0.17 -0.01 0.16 -0.43 -0.1 -1.78 -0.59 0.2 -0.62 0.18 -0.19 -1.18 -1.29 0.6 -1.24 -1.44 -2.17 -2.89 -1.33 -0.37 -1.98 -1.89 -3.1 -1.29 -1.54 -2.2 -1.61 -1.08 -1.75 -0.77 -2.76 -2.93 -0.99
AKI48927 (drrA)
-1.92 -2.34 -2.15 -1.87 -2.9 -2.99 -1.75 -1.54 -1.76 -1.79 -1.97 -3.08 -3.79 -2.33 -2.9 -5.91 -4.01 -3.91 -4.05 -3.0 -3.23 -3.11 -2.58 -2.61 -3.01 -2.72 -2.72 -2.54 -2.65 -2.49 -2.31 -2.35 -2.72 -3.76 -3.48 -3.03 -3.29 -3.6 -3.3 -3.15 -3.8 -4.17 -4.92 -3.96 -3.53 -3.0 -3.57 -3.21 -2.82 6.41 -2.42 -3.17 -2.64 -2.77 -3.1 -3.93 -3.59 -2.03 -2.56 -1.9 -1.94 -3.16 -3.36 -2.3 -1.67 -2.83 -2.37 -3.25 -2.35 -3.63 -1.9 -1.92 -3.99 -5.09 -4.83 -5.54 -5.95 -5.69 -3.46 -2.87 -0.8 -1.59 -1.53 -1.88 -2.76 -1.9 -2.0 -2.46 -2.33 -3.38 -1.51 -3.67 -3.43 -4.11 -2.4 -3.81 -2.27 -3.87 -4.01 -3.58
AKI48928 (L2625_01009)
-2.0 -1.64 -1.36 -1.78 -3.14 -3.17 -2.42 -1.76 -2.18 -2.34 -2.25 -0.89 -2.71 -2.66 -1.94 -3.59 -3.28 -3.47 -3.44 -2.59 -2.43 -2.99 -2.37 -2.32 -2.65 -3.05 -2.52 -2.08 -2.52 -2.05 -2.19 -2.2 -2.41 -2.6 -2.84 -2.21 -3.15 -3.68 -2.75 -2.91 -2.69 -3.42 -2.41 -3.21 -2.89 -2.73 -3.15 -2.82 -2.33 6.3 -2.31 -2.7 -2.16 -2.28 -2.34 -3.18 -3.16 -0.8 -2.09 -1.12 -0.98 -2.24 -2.84 -2.45 -1.24 -1.33 -1.15 -1.75 -2.25 -3.16 -1.16 -0.74 -3.39 -3.96 -3.9 -3.83 -4.65 -4.41 -2.91 -2.47 -0.52 -1.18 -1.01 -1.28 -1.65 -1.75 -1.64 -1.81 -1.58 -2.31 -1.97 -2.79 -2.54 -3.41 -2.18 -3.13 -2.22 -3.35 -3.16 -2.91
AKI48929 (L2625_01010)
-1.58 -0.54 -0.27 -1.04 0.49 0.51 -1.61 -0.79 -1.42 -1.38 -1.65 -3.95 -4.34 -0.55 0.29 -4.97 -0.3 0.09 -0.16 1.12 1.0 -0.0 0.27 0.02 0.06 -0.22 0.09 -0.02 -0.26 -0.06 0.13 -0.28 -0.24 0.76 0.19 0.03 -0.16 -0.16 -0.13 0.06 0.09 0.01 0.07 0.06 0.08 -0.27 0.11 -0.05 0.23 2.62 0.98 0.66 1.1 1.11 0.95 -0.2 0.24 0.02 -1.87 -1.91 -1.86 -1.42 -1.13 0.25 -1.34 0.04 0.43 -1.49 -1.95 -1.6 0.06 0.52 0.1 -1.9 -1.2 -1.45 -1.13 -1.25 -0.06 -0.66 -0.33 0.67 1.18 1.11 0.26 -0.87 -0.59 0.5 0.87 0.5 0.3 -0.23 -0.35 -0.02 -0.4 0.09 -1.53 0.15 0.05 -0.9

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.