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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | 10403S,Log | 10403S,WT | 10403S,LMRG 00730 deleted | 10403S,delta sigB,Log | 10403S,WT,Log | 10403S,virR deleted,Log | 10403S,WT,Bile | 10403S,WT,ctrl | 10403S,delta sigB,Bile | 10403S,delta sigB,ctrl | 10403S | ATCC 19115,Lactic acid(1h) | ATCC 19115,ctrl | WT | EGD | ATCC 19115,linalool | EDGe,37C(20min) | EDGe,20C(20min) | EDGe,20C(3h) | EDGe,Light | EDGe,Dark | EGD,MQ Water(0h) | EGD,MW Water(10min) | EGD,0.1875% L.plantarum(10min) | EGD,MQ Water(1h) | EGD,0.1875% L.plantarum(1h) | EGD,0.1875% L.plantarum+1mg/ml Pro-K(1h) | EGD,MQ Water(at 0h) | EGD,MQ Water(at 3h) | EGD,Ampicillin 0.03g/ml(at 3h) | EGD,Tetracycline 0.035g/ml(at 3h) | EGD,Gentamicin 0.3g/ml(at 3h) | EGD,Co-trimoxazole 0.2g/ml(at 3h) | EGDe | EGD,WT | 37C,Late-Log | EGD,delta Lmo1408 | EGD,delta Lmo0422 | EGD,delta Lmo0599 | EGDe,Lincomycin 0.25g/ml | EGDe,Chloramphenicol 0.4g/ml | EGDe,Erythromycin 0.03125g/ml | EGDe,Kanamycin 0.5g/ml | EGDe,Ofloxacin 2g/ml | EGDe,Ampicillin 1g/ml | EGDe,Bacitracin 8g/ml | EGDe,ctrl | EGDe,Lincomycin 0.5g/ml | EGDe,WT | EGDe,delta lftR | EGDe,37C,Late-Log | EGDe,WT,Light | EGDe,WT,Dark | EGDe,Light | EGDe,Dark | FFH,30C | FFH,10C | H1,37C,Late-Log | H2,37C,Late-Log | H3,37C,Late-Log | H5,37C,Late-Log | H6,37C,Late-Log | H7,37C,Late-Log | H8,37C,Late-Log | H10,37C,Late-Log | H11,37C,Late-Log | H17,37C,Late-Log | H19,37C,Late-Log | H27,37C,Late-Log | H28,37C,Late-Log | H31,37C,Late-Log | H32,37C,Late-Log | 568 | H7858,Log | H7858,WT,Bile | H7858,WT,ctrl | H7858,delta sigB,Bile | H7858,delta sigB,ctrl | LL195,ctrl | LL195,acid | Lm1,4C,Late-Stationary | Lm1,4C,Late-Log | Lm1,4C,Log | Lm1,WT,4C,Log | Lm1,4C,Lag | Lm1,20C,Late-Stationary | Lm1,20C,Late-Log | Lm1,20C,Log | Lm1,WT,20C,Log | Lm1,20C,Lag | LO28,37C,Late-Log | N12-0605,ctrl | N12-0605,acid | N13-0047,ctrl | N13-0047,acid | N13-1507,ctrl | N13-1507,acid | rli47,Log | WT,Log | Scott A,37C,Late-Log |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKI50623 (L2625_02833) | 0.5 | -1.42 | -0.13 | 0.2 | -0.58 | -0.85 | 0.56 | -0.8 | 0.25 | -2.0 | -0.98 | -5.08 | -6.62 | 0.2 | -0.19 | -5.6 | -0.73 | -1.33 | -1.69 | 0.44 | 0.65 | 0.47 | 0.25 | 1.1 | 0.18 | 0.36 | -0.28 | 0.52 | 0.94 | 0.83 | 0.63 | 0.97 | -0.78 | -1.17 | 0.62 | 1.77 | 0.97 | 0.34 | 1.24 | 1.13 | 0.47 | 0.52 | 0.65 | 1.05 | 0.99 | 1.46 | -0.06 | -0.12 | 0.02 | 0.42 | 0.68 | -0.61 | 0.47 | 0.1 | 0.06 | -0.15 | -0.12 | 0.97 | -5.93 | -0.81 | -1.02 | -0.96 | -1.1 | -0.15 | -3.51 | -0.67 | 0.54 | - | -7.18 | -0.97 | -0.48 | 0.06 | -1.54 | -0.52 | 1.0 | -1.49 | 0.83 | -1.37 | -0.21 | -0.87 | -1.78 | -1.2 | 0.13 | 0.12 | 1.28 | -2.07 | -2.14 | 0.52 | -0.15 | -0.51 | -0.71 | -0.39 | -0.47 | -0.13 | -0.1 | 0.16 | -1.21 | -1.55 | -2.02 | - |
AKI50624 (ftsW) | 0.9 | -1.68 | -0.48 | 0.62 | -1.01 | -1.28 | 0.75 | -0.58 | 0.59 | -1.85 | -1.05 | -2.9 | -5.45 | 0.66 | -0.46 | -4.32 | -1.17 | -1.67 | -1.87 | 0.16 | 0.49 | 1.17 | 1.08 | 1.38 | 0.44 | 0.89 | 0.1 | 0.49 | 0.47 | 0.4 | 0.32 | 0.71 | -0.63 | -1.12 | 0.24 | 1.0 | 0.37 | -0.1 | 0.86 | 0.96 | 0.03 | 0.29 | 0.7 | 0.75 | 0.85 | 1.46 | 0.16 | 0.07 | -0.28 | 0.35 | -0.11 | -1.05 | 0.02 | -0.31 | -0.21 | 0.2 | -0.03 | -0.47 | -4.08 | -1.93 | -1.63 | -0.92 | -1.32 | -0.87 | -3.39 | -1.58 | -0.64 | -5.0 | -7.33 | -0.98 | -1.26 | -0.98 | -2.42 | -0.38 | 2.36 | -0.28 | 2.19 | -0.18 | 0.2 | -0.34 | -2.24 | -1.48 | -0.08 | -0.21 | 1.07 | -3.02 | -2.53 | 0.49 | -0.36 | -0.54 | -1.5 | -0.1 | -0.43 | 0.37 | 0.44 | 0.65 | -0.32 | -1.85 | -2.26 | -7.06 |
AKI50625 (mgtA) | 0.11 | -1.23 | -0.45 | 0.91 | -0.9 | -0.98 | 0.89 | -0.43 | 0.33 | -1.57 | -0.37 | -1.34 | -4.15 | 0.58 | -0.99 | -4.91 | -1.27 | -1.5 | -2.0 | 0.04 | 0.23 | 1.47 | 0.9 | 1.58 | 0.63 | 1.08 | 0.26 | 0.78 | 1.54 | 0.74 | 0.75 | 1.64 | -0.04 | -1.5 | -0.3 | 0.97 | -0.23 | -0.67 | 0.02 | 0.76 | 0.08 | 0.15 | 0.04 | 0.26 | 0.5 | 1.24 | 0.14 | 0.46 | -0.82 | 0.08 | -0.12 | -1.06 | 0.19 | -0.38 | -0.57 | 0.62 | 0.83 | -0.3 | -5.33 | -1.92 | -1.48 | -1.12 | -1.68 | -0.73 | -2.85 | -1.99 | -0.32 | -4.78 | -4.54 | -1.74 | -1.51 | -0.65 | -1.76 | 1.1 | 1.92 | -0.71 | 1.57 | -0.59 | -0.41 | -0.93 | -3.41 | -1.2 | 0.39 | 0.32 | 1.39 | -3.24 | -2.61 | 1.1 | 0.18 | -0.16 | -1.77 | -0.36 | -1.11 | -0.39 | -0.02 | 0.3 | -0.98 | -2.0 | -2.73 | -4.73 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.