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Heatmap: Cluster_35 (HCCA)

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(Showing raw values)

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Gene
0.02% arabinose,A1552
0.5mM indole,N16961
37C,C6706
arabinose-,A1552
E-exponential,5uM AI-2,C6706
E-exponential,5uM CAI-1,C6706
E-exponential,5uM DPO,C6706
E-exponential,Water,C6706
empty Tn
E-stationary,0.2% L-arabinose,C6706
LB(2% NaCl),30C,N16961
LB,C7258
Log,0.2% L-arabinose,C6706
Methanol,N16961
O395
Polymyxin,C6706
Polymyxin,VC1639
riboflavin-,N16961
riboflavin+,N16961
TnqstR
TntfoY
TntoX-strep
Water,Rich,N16961
KNA47890 (VCV51_033872)
 19.11 13.87 5.89 17.76 28.14 29.35 31.8 24.06 19.3 31.06 12.99 36.34 22.86 14.11 9.38 15.78 21.88 31.62 32.45 17.34 15.88 16.97 34.65
KNA50361 (VCV51_031434)
 41.82 35.5 18.51 27.32 78.09 73.38 78.5 83.62 44.11 63.6 39.8 48.4 53.79 32.67 30.96 92.27 82.08 93.7 110.15 45.9 50.32 46.95 35.76
KNA51127 (RpoE)
 627.98 748.87 223.29 503.97 305.53 282.32 337.53 293.92 2289.86 398.74 990.75 1264.97 880.18 771.68 359.07 2776.86 1791.47 3608.57 3020.71 2155.02 1760.03 1666.32 881.04
KNA51129 (VCV51_031660)
 231.02 251.93 85.69 211.04 111.69 117.26 133.46 113.56 535.14 151.44 275.68 523.5 300.3 257.07 169.66 806.38 524.61 569.69 579.69 474.29 388.25 405.67 323.61
KNA51130 (VCV51_033630)
 117.9 94.06 115.15 110.37 129.89 129.8 140.88 131.51 176.16 145.38 175.52 440.11 280.92 107.58 158.1 1009.42 534.66 378.72 372.46 170.38 130.86 138.78 337.84
KNA51165 (VCV51_031672)
 89.83 25.84 32.55 61.69 234.74 240.97 263.08 228.94 94.69 139.22 78.72 110.96 167.71 22.2 24.27 152.74 83.6 173.64 165.84 77.28 76.16 102.63 74.68
KNA53013 (VCV51_033367)
 35.9 26.24 13.37 30.7 53.78 53.86 60.17 54.02 44.3 49.31 30.77 57.62 39.27 25.85 22.4 51.37 48.28 65.35 69.55 37.09 28.53 28.35 55.11
KNA53582 (VCV51_030059)
 21.55 14.21 12.99 19.52 34.62 38.7 39.49 29.88 27.83 31.24 25.05 31.26 31.49 16.67 14.36 28.04 33.34 32.47 37.02 23.66 20.64 24.53 30.92
KNA53931 (VCV51_030854)
 21.0 5.85 5.6 15.76 9.92 8.85 8.47 8.82 30.5 8.56 5.85 11.05 12.0 5.83 3.1 36.03 38.0 29.63 28.15 24.44 26.52 28.06 19.16
KNA54634 (VCV51_033210)
 43.37 90.95 19.16 31.75 77.07 85.72 81.54 84.73 134.04 52.95 77.03 76.91 64.37 112.0 39.17 122.5 108.9 186.94 169.55 90.94 89.87 90.53 70.6
KNA54654 (VCV51_033222)
 46.88 52.59 30.61 34.34 26.12 19.75 22.77 19.38 112.79 25.57 27.82 31.08 23.23 63.17 24.94 126.83 120.0 82.25 81.21 91.78 85.47 93.86 120.49
KNA54687 (VCV51_030772)
 129.85 16.48 21.12 65.97 210.48 210.28 224.7 177.55 107.43 64.51 42.01 70.94 139.67 17.2 21.86 191.96 148.94 180.82 206.44 99.58 87.59 107.17 108.92
KNA54688 (VCV51_030773)
 59.86 7.02 12.78 35.82 83.62 72.2 85.65 73.33 40.29 28.87 16.37 46.56 41.07 7.04 10.32 44.28 38.44 65.19 64.15 43.21 36.95 45.55 37.73
KNA54689 (VCV51_030774)
 64.29 7.96 13.61 37.7 96.21 69.68 90.17 76.98 64.19 19.89 20.9 50.64 33.32 8.58 14.3 50.89 38.97 80.48 82.0 70.22 59.64 66.92 33.86
KNA54791 (VCV51_033205)
 67.59 62.11 26.33 50.21 50.77 56.0 60.25 45.99 94.39 71.63 40.7 100.57 64.48 54.64 33.11 114.09 99.81 103.6 101.27 91.99 92.79 100.63 118.18
KNA55092 (VCV51_031843)
 15.49 18.79 12.23 11.99 31.82 32.18 33.22 27.0 15.2 29.53 22.95 46.55 21.96 23.78 19.16 11.14 14.7 19.09 22.31 16.49 17.87 17.19 26.25
KNA55220 (VCV51_033052)
 6.0 5.24 1.34 4.46 11.68 12.3 12.83 10.87 15.15 7.35 4.6 8.06 7.87 6.0 3.6 22.68 20.66 17.09 17.53 15.12 10.99 12.64 10.52
KNA55221 (VCV51_033053)
 19.32 5.94 7.88 13.91 18.44 18.2 17.99 17.09 21.39 16.99 15.34 14.08 16.6 8.05 7.32 30.92 30.26 33.47 36.34 21.63 19.37 23.61 12.4
KNA55685 (VCV51_030999)
 61.69 39.82 28.13 45.75 81.03 73.27 74.55 82.32 69.62 39.19 29.06 49.47 44.22 41.91 43.21 110.95 102.29 93.42 101.52 69.58 61.5 66.05 73.36
KNA55994 (VCV51_030912)
 19.61 8.85 8.04 7.39 25.4 25.71 26.44 27.9 25.27 14.94 12.26 27.58 15.33 7.98 18.84 24.94 21.22 24.49 24.97 24.76 27.22 34.09 22.88
KNA56001 (VCV51_030920)
 54.52 14.36 8.85 39.46 42.09 40.36 42.09 40.01 77.12 33.38 32.19 35.31 52.94 11.39 15.52 100.61 98.24 80.78 87.21 62.53 69.42 81.08 64.45
KNA56007 (VCV51_030924)
 9.33 3.62 6.63 7.08 29.6 26.17 25.12 28.83 9.11 13.3 8.14 10.78 15.8 3.75 1.84 7.29 6.12 9.37 10.88 7.47 8.12 8.64 29.75
KNA56008 (VCV51_030925)
 9.77 2.72 7.33 9.98 16.27 14.89 15.34 15.16 9.87 11.7 6.04 9.65 11.83 2.84 2.51 13.57 10.74 11.77 12.93 8.62 8.41 9.57 17.23
KNA56154 (VCV51_030894)
 27.55 19.33 18.57 19.84 29.43 32.24 29.67 27.48 22.3 23.9 21.57 34.76 19.68 19.32 24.77 59.0 51.46 51.32 51.75 23.19 24.13 22.61 46.01
KNA56155 (VCV51_032991)
 30.89 44.09 9.22 18.1 34.3 36.87 35.63 29.6 39.87 30.03 29.58 43.83 23.43 42.11 22.54 77.0 67.78 42.34 49.21 48.98 51.47 48.25 16.08
KNA56171 (VCV51_030907)
 51.27 23.35 62.47 36.63 48.29 61.2 59.92 46.7 74.3 93.01 37.41 93.89 142.88 23.69 32.97 213.87 188.82 227.8 241.05 101.15 77.41 65.99 86.43
KNA56282 (VCV51_030600)
 40.4 97.25 18.97 29.22 67.26 73.19 78.92 68.29 57.31 88.6 71.01 113.51 90.25 100.5 88.07 104.01 92.74 110.93 101.84 52.17 43.74 57.43 79.42
KNA56289 (VCV51_030607)
 42.8 42.56 12.22 21.21 34.12 38.77 39.13 33.59 63.87 48.37 42.0 120.64 47.13 42.63 80.93 76.89 63.41 66.07 73.67 57.54 54.57 76.0 70.64
KNA56411 (VCV51_032966)
 97.24 76.21 26.63 60.71 88.66 153.05 90.38 59.22 112.26 272.69 253.79 221.72 74.2 79.42 59.32 155.71 126.0 186.9 217.99 99.92 99.6 125.73 235.25
KNA56412 (VCV51_030683)
 61.46 87.01 11.98 35.89 68.05 121.38 70.55 47.02 91.49 179.0 241.85 177.24 60.46 85.3 58.92 120.06 95.07 147.08 167.06 72.9 71.99 99.62 215.75
KNA56417 (VCV51_032967)
 181.03 51.36 103.56 115.04 228.45 221.27 234.14 211.52 260.49 201.4 177.3 351.4 210.43 61.24 246.85 258.86 228.04 337.57 386.41 215.91 212.08 227.67 170.37
KNA56876 (VCV51_030511)
 35.16 23.63 18.33 27.82 43.03 42.39 43.02 38.53 52.36 28.76 38.95 20.37 30.78 23.46 24.35 51.81 53.51 42.64 47.47 55.12 36.59 46.48 45.59
KNA56925 (VCV51_032876)
 18.16 6.83 7.01 12.85 12.79 10.88 11.98 9.43 14.86 11.76 7.78 17.82 15.12 6.98 10.25 22.45 20.32 25.65 28.01 15.72 13.27 14.23 12.46
KNA56927 (RadC)
 7.82 0.83 2.15 5.76 1.37 2.12 2.04 1.37 10.29 2.79 1.61 4.68 1.87 0.97 2.34 10.59 7.29 5.5 5.94 8.18 8.5 8.27 8.72
KNA57123 (VCV51_032855)
 83.19 66.02 22.91 48.16 143.71 115.32 92.06 131.33 181.74 71.19 110.89 28.38 76.89 80.49 60.87 47.01 53.77 145.36 167.77 169.56 194.16 183.07 36.35
KNA57442 (VCV51_030441)
 63.29 44.49 26.62 49.02 227.27 227.81 232.01 257.96 209.45 68.13 124.04 82.58 95.97 43.55 54.76 129.43 120.01 242.12 255.03 162.34 143.31 162.24 159.59
KNA57476 (VCV51_030460)
 36.85 71.79 10.39 20.69 126.07 126.57 129.55 128.99 94.27 40.03 84.66 54.78 40.47 67.23 58.57 95.48 95.41 87.33 97.39 70.67 77.62 87.51 80.76
KNA58529 (VCV51_031169)
 34.24 28.17 10.36 27.3 4.17 3.94 4.42 3.86 109.99 53.34 26.5 39.75 8.68 29.05 6.82 185.56 141.07 211.19 212.92 82.96 67.82 78.32 47.21
KNA58596 (VCV51_031114)
 65.83 45.46 34.98 37.49 83.09 86.9 84.22 76.21 71.43 100.12 164.43 143.78 90.18 42.1 37.16 125.86 106.07 145.61 169.7 66.86 53.7 82.49 91.17
KNA59417 (DsbB)
 22.4 52.46 20.31 17.44 85.68 94.32 103.66 88.08 44.41 99.22 76.08 101.95 116.38 59.09 29.0 118.63 95.52 168.6 151.98 41.54 46.42 44.23 123.13
KNA59419 (FadR)
 149.62 192.63 51.09 108.63 102.4 117.7 123.4 104.0 315.39 101.99 154.64 177.05 129.1 188.56 121.27 357.76 315.29 233.67 224.83 290.77 281.89 290.65 207.03
KNA59647 (VCV51_031369)
 74.69 96.47 39.42 45.36 145.66 127.97 130.49 131.99 105.51 79.58 74.27 112.21 95.22 95.89 128.47 175.07 151.05 188.56 190.68 89.4 93.89 94.54 124.41
KNA59860 (VCV51_032271)
 21.61 3.42 20.61 17.6 57.82 51.11 51.89 55.64 16.34 40.87 8.54 33.02 31.52 2.99 6.47 16.0 23.49 18.77 20.74 15.11 13.62 18.09 18.34
KNA59881 (VCV51_032292)
 159.11 169.83 92.54 128.19 368.88 470.88 491.06 355.29 132.59 451.29 229.33 349.07 422.08 166.65 474.11 84.23 101.31 497.12 469.98 113.74 105.09 107.76 963.56
KNA59898 (VCV51_032309)
 19.93 20.64 12.9 23.39 30.61 47.94 43.86 45.48 25.82 34.62 9.19 31.55 24.28 19.48 18.28 13.87 23.92 23.41 22.52 24.54 20.32 22.81 38.7
KNA59946 (VCV51_032358)
 35.81 25.95 25.9 27.15 86.32 78.1 74.74 72.95 32.24 48.2 27.2 60.58 26.38 22.94 35.32 30.16 39.21 32.27 34.2 27.06 26.6 30.23 86.19
KNA59949 (VCV51_032361)
 7.48 20.27 3.3 6.17 34.04 28.1 29.92 30.27 16.21 11.04 4.02 9.48 15.73 22.04 4.89 9.63 13.53 11.96 12.91 10.44 9.23 14.22 23.38
KNA60006 (VCV51_032418)
 14.29 8.21 15.37 9.63 89.65 69.3 71.98 85.56 19.5 19.82 11.19 23.27 18.09 7.2 5.48 17.66 23.97 20.44 19.67 16.29 16.89 18.75 124.5
KNA60604 (VCV51_032193)
 17.95 4.81 25.92 14.36 44.89 39.07 43.95 41.49 12.87 25.41 19.1 17.21 19.09 4.55 13.5 3.6 4.99 11.15 14.32 14.21 15.46 18.64 29.14
KNA60769 (VCV51_032031)
 22.37 6.52 14.69 15.85 35.75 35.61 35.41 33.73 17.93 19.74 20.59 17.59 19.05 6.03 22.99 5.2 8.62 28.34 32.68 17.1 16.29 17.6 61.45
KNA60971 (VCV51_031946)
 10.99 0.53 3.77 16.18 8.69 12.85 10.4 14.12 8.19 12.62 0.95 6.83 4.81 0.45 1.01 2.92 5.83 12.55 11.16 6.47 5.06 6.68 8.2
KNA60972 (VCV51_031947)
 9.62 0.32 1.6 12.18 7.68 8.18 7.79 8.95 7.88 8.34 0.83 5.0 2.41 0.35 0.22 1.83 3.44 9.75 8.83 6.51 4.71 5.76 0.06

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)