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Heatmap: Cluster_74 (HCCA)

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(Showing raw values)

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Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
CRN79419 (pqiA_1)
 39.26 24.89 44.2 18.23 82.47 59.67 19.81 12.44 12.22 42.57 59.08 62.04 59.94 48.69 31.9 28.1 34.65 33.14 30.65 54.08 48.18 53.54 18.56 30.93 24.8 36.42 30.72 26.75 22.77 31.14 36.21 22.36 24.37 7.56 20.04 7.07 11.0 19.77 9.72 13.49 22.16 16.89 7.84 11.26 20.34 15.61 21.5 4.57 4.91 11.69 18.46 22.42 17.16 14.75 15.53 3.15 13.24 21.63 15.68 18.14 17.5 16.08 18.73 9.95 8.44 36.19 78.53 47.14 44.46 40.97 8.93 24.53 38.77 27.47 48.99 12.69
0.0 4.91 5.57 0.0 31.22 6.73 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.57 3.75 0.0 4.34 2.76 4.32 2.41 6.6 3.97 1.79 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 51.7 13.04 5.88 7.93 3.05 0.0 5.57 0.0 6.71 11.85 0.0
0.0 4.76 4.5 0.0 62.68 10.59 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.99 10.54 0.0 5.24 4.33 7.46 2.74 8.94 6.23 2.24 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 88.76 14.57 6.65 8.32 2.57 0.0 13.93 0.0 9.15 21.19 0.0
0.0 81.82 9.79 0.0 36.74 18.48 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 5.84 35.47 0.0 6.83 6.94 7.42 5.95 9.84 9.52 4.79 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 43.48 14.94 8.2 9.66 9.13 0.0 127.69 0.0 9.01 29.46 0.0
0.0 31.21 24.17 0.0 41.81 59.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 12.9 25.14 0.0 15.79 23.28 38.38 28.21 23.11 31.88 3.18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 53.54 51.78 36.47 42.23 46.8 0.0 40.48 0.0 29.43 48.45 0.0
0.0 47.59 42.39 0.0 64.68 35.99 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 27.73 13.77 0.0 4.61 25.6 46.33 40.74 31.33 32.81 3.65 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 73.72 44.25 78.13 34.16 29.07 0.0 14.61 0.0 11.45 40.12 0.0
CRP41187 (prpR_2)
 6.45 16.78 19.55 0.0 34.19 28.32 0.0 0.0 0.0 23.59 47.28 55.39 56.95 21.96 15.54 55.11 28.54 15.65 16.89 25.94 16.29 50.78 5.78 20.7 0.21 10.85 13.98 23.76 19.74 30.97 19.73 2.12 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.94 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.11 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.02 0.01 35.51 36.9 29.75 41.42 17.08 2.42 23.63 15.82 21.53 26.7 0.0
0.0 1.54 1.89 0.0 49.69 2.32 0.0 0.0 0.0 2.52 1.71 2.55 2.78 4.88 1.16 1.77 1.05 0.5 2.63 6.1 3.52 2.4 6.12 1.37 0.0 3.35 8.76 18.11 0.94 31.59 3.82 1.99 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.41 6.84 3.21 2.24 2.36 0.09 2.0 0.47 1.36 25.15 0.0
0.0 0.9 1.24 0.0 84.86 4.72 0.0 0.0 0.0 4.06 2.56 3.49 3.56 9.17 1.77 2.51 3.04 0.47 5.53 7.13 10.0 2.99 5.41 1.61 0.0 3.9 8.92 22.34 2.04 24.95 2.91 4.92 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.79 6.43 3.44 3.54 1.53 0.09 1.77 0.43 2.14 42.13 0.0
CRP41267 (acdA_6)
 0.0 2.79 2.54 0.0 82.76 2.99 0.0 0.0 0.0 3.31 3.98 4.92 4.86 5.21 1.45 4.07 1.11 0.96 3.05 4.87 3.65 3.78 3.39 2.28 0.0 2.62 8.86 18.9 1.05 29.68 3.1 1.53 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.14 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.24 8.97 4.19 4.01 1.78 0.12 3.6 0.87 2.61 28.4 0.0
CRP41300 (gno)
 0.0 2.2 1.98 0.0 104.33 2.59 0.0 0.0 0.0 3.36 2.92 3.43 4.32 3.43 1.08 3.72 1.49 0.66 3.11 3.96 4.94 3.04 4.18 1.7 0.0 3.59 7.07 15.25 2.45 15.71 2.22 1.98 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.35 7.31 2.93 2.91 1.66 0.11 3.87 0.64 2.67 38.28 0.0
0.0 2.82 2.72 0.0 40.09 4.23 0.0 0.0 0.0 5.84 5.23 5.74 5.96 9.46 2.4 5.87 1.79 1.15 9.53 25.4 11.6 4.91 3.58 4.93 0.0 3.27 7.01 17.52 2.29 20.83 3.08 1.89 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.38 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.38 8.85 3.21 3.55 3.08 0.21 3.73 1.19 5.81 22.85 0.0
CRP41362 (yjcH_2)
 0.0 4.24 6.27 0.0 55.78 2.05 0.0 0.0 0.0 15.65 13.89 17.1 14.18 18.49 6.95 15.7 1.58 3.37 25.27 88.78 29.72 13.48 6.84 25.65 0.0 3.33 5.01 16.41 3.01 23.13 4.17 3.38 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.19 11.65 4.65 4.05 1.86 0.47 2.84 3.61 3.46 7.66 0.0
CRP41395 (actP_2)
 0.0 5.18 7.78 0.0 11.72 5.1 0.0 0.0 0.0 9.35 8.62 8.06 8.21 17.68 4.04 16.31 1.62 2.08 37.35 114.01 37.5 6.81 13.27 17.56 0.0 3.49 4.86 16.98 2.61 28.26 3.96 2.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.09 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.07 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.99 11.65 6.86 5.86 3.86 0.3 4.46 2.69 4.02 12.13 0.0
CRP41453 (glxR_1)
 0.0 5.01 5.43 0.0 67.12 4.57 0.0 0.0 0.0 8.2 9.44 8.14 9.84 6.73 1.69 18.05 4.01 4.38 14.87 11.17 23.54 8.1 7.38 8.91 0.0 5.67 3.35 7.37 2.68 5.53 4.0 2.07 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.02 13.19 5.67 5.69 5.98 0.34 13.58 4.18 5.86 25.94 0.0
CRP41486 (ectB)
 0.0 3.31 5.73 0.0 37.69 14.74 0.0 0.0 0.0 11.9 13.09 11.61 14.08 14.82 4.56 38.0 15.73 5.56 18.66 7.57 25.9 14.2 2.89 19.24 0.03 2.73 2.51 4.91 2.95 6.23 3.71 1.74 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 18.89 9.66 4.56 5.08 2.91 0.52 20.88 5.63 5.48 19.02 0.0
CRP41515 (prr)
 0.0 3.61 5.01 0.0 36.93 13.07 0.0 0.0 0.0 12.1 13.79 12.33 14.2 24.35 5.94 26.83 6.41 4.47 16.59 18.74 22.45 11.31 3.86 12.78 0.0 3.26 2.52 5.12 2.41 7.93 3.35 2.31 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.22 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.01 9.32 7.73 4.1 3.71 2.55 0.4 16.86 4.73 3.87 18.43 0.0
CRP41546 (puuP_3)
 0.0 6.83 10.86 0.0 40.16 13.71 0.0 0.0 0.0 12.1 15.42 14.6 12.19 23.97 6.64 14.79 7.17 4.12 19.15 27.04 25.01 11.7 7.42 11.13 0.0 3.35 3.2 13.82 2.8 16.24 4.73 2.27 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.36 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.26 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 10.98 9.79 5.75 6.52 5.55 0.64 8.09 4.65 8.68 17.88 0.0
CRP41568 (dhaT_2)
 0.0 2.29 5.0 0.0 25.41 7.89 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.15 4.85 0.0 4.44 2.97 5.02 1.34 7.4 4.31 2.62 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 7.81 9.09 4.42 5.28 3.91 0.0 10.24 0.0 3.75 10.2 0.0
CRP41600 (rutD)
 0.0 10.67 26.2 0.0 26.36 2.89 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 7.23 6.39 0.0 8.22 2.99 5.25 2.62 5.44 5.2 2.19 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.07 17.88 12.48 8.09 4.99 0.0 32.94 0.0 3.49 11.63 0.0
CRP41629 (ethA_1)
 0.0 15.58 25.58 0.0 36.19 15.9 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.18 13.34 0.0 7.09 6.14 10.45 5.78 13.66 8.07 2.26 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 20.19 18.23 12.25 13.09 10.28 0.0 38.54 0.0 9.07 15.65 0.0
0.0 80.39 64.57 0.0 67.45 171.5 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 81.0 42.6 0.0 98.17 82.72 85.69 42.9 76.86 81.71 9.66 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 113.6 83.16 81.47 72.03 105.21 0.0 45.54 0.0 47.65 89.66 0.0
0.0 6.99 11.46 0.0 60.22 12.82 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.99 5.47 0.0 2.7 6.95 5.36 10.52 5.34 9.75 2.69 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 12.64 17.4 13.06 12.47 14.58 0.0 15.83 0.0 6.69 10.73 0.0
CRP41754 (puuB_9)
 0.0 12.13 12.74 0.0 46.96 19.48 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.07 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 10.26 10.44 0.0 8.82 11.76 10.24 6.71 7.42 15.48 2.91 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 19.48 20.87 15.06 16.18 14.25 0.0 14.01 0.0 10.64 15.58 0.0
0.0 19.48 17.6 0.0 58.27 8.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 15.78 18.66 0.0 1.7 5.33 9.72 4.05 10.2 10.74 3.39 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.52 5.82 10.0 6.89 8.71 0.0 10.14 0.0 3.99 34.59 0.0
0.0 2.9 2.77 0.0 40.33 5.35 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.84 2.35 0.0 1.75 2.25 7.98 2.32 11.58 3.01 2.64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.8 5.27 3.45 3.04 2.46 0.0 9.62 0.0 2.49 10.08 0.0
0.0 4.85 4.66 0.0 32.86 3.89 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.95 5.61 0.0 3.06 3.26 8.56 4.71 12.71 4.47 1.84 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 22.58 7.49 4.48 4.44 3.94 0.0 7.44 0.0 4.27 10.47 0.0

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)