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Heatmap: Cluster_29 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19011 (lspA)
 218.94 289.99 187.4 182.56 264.48 215.26 75.26 346.88 328.48 216.37 244.2 357.97 244.73 531.29 96.7 103.77 27.98 56.49 50.76 59.87 117.26 185.66 136.98 228.42 110.27 286.01 301.37 236.9 245.65 71.24 171.5 300.57 254.96 83.45 21.49 261.78 278.21 303.51 287.6
AAL19217 (dniR)
 205.69 264.59 124.13 247.31 71.22 48.86 162.33 470.81 256.68 395.79 443.14 392.06 418.75 672.36 263.14 119.9 58.95 298.91 299.67 459.32 48.72 317.69 131.74 170.08 54.02 197.46 121.9 319.56 355.83 175.7 142.05 139.82 389.51 129.38 34.3 195.07 249.33 91.34 223.43
AAL19249 (STM0292)
 14.78 59.82 32.37 9.25 9.08 2.03 82.74 24.84 12.05 20.78 17.82 5.16 58.74 23.61 11.27 0.21 8.49 53.28 27.09 57.72 26.36 28.04 0.01 45.87 18.38 12.85 0.26 22.49 11.03 8.48 21.26 18.17 10.42 0.24 3.94 0.29 38.76 24.9 26.23
AAL19287 (STM0333)
 9.26 43.37 19.27 8.53 6.82 4.5 17.73 18.74 11.45 12.92 20.24 5.79 20.15 19.5 20.68 23.09 14.52 17.04 18.69 24.99 8.57 15.75 12.74 5.17 9.86 15.17 11.37 14.45 9.73 5.54 7.03 9.17 9.04 22.57 67.72 10.74 5.34 10.47 13.76
AAL19358 (queA)
 60.12 66.37 12.07 27.86 29.1 7.65 46.61 75.28 57.12 20.83 77.94 138.26 40.65 103.18 47.04 7.57 22.28 35.58 43.11 42.52 9.91 23.56 10.69 91.75 9.33 65.0 71.43 33.91 37.62 17.51 15.92 29.63 46.16 6.8 34.37 70.42 84.63 19.37 64.78
AAL19409 (ybaW)
 26.18 75.78 119.07 19.77 39.65 22.07 41.27 36.43 21.0 29.19 30.37 17.65 99.35 46.36 18.97 143.2 17.97 29.02 33.15 33.41 46.3 92.56 44.99 68.58 70.14 32.71 20.72 65.1 26.24 7.38 20.29 30.85 23.07 174.44 48.53 13.25 89.86 56.36 46.36
AAL19523 (STM0572)
 2.68 10.53 13.45 3.61 3.51 2.26 1.13 4.79 5.72 11.86 13.83 1.35 6.05 3.92 1.2 0.0 1.58 1.21 1.53 1.97 1.15 2.66 0.0 0.0 2.29 4.9 5.15 2.65 3.07 0.61 1.33 4.0 2.41 0.0 13.49 2.88 0.01 6.5 3.65
AAL19524 (STM0573)
 2.26 10.95 5.98 1.74 1.3 1.25 1.3 3.66 5.7 5.21 11.76 0.95 3.15 3.03 1.06 0.0 1.55 1.66 1.66 2.18 2.19 1.88 0.0 0.0 3.08 2.52 5.24 1.76 1.69 0.29 0.56 1.78 1.49 0.0 8.82 2.67 0.0 2.06 1.81
AAL19525 (STM0574)
 4.49 16.04 8.71 2.13 1.7 1.51 2.05 6.22 7.52 5.34 13.74 1.36 4.81 4.75 2.96 0.0 2.5 3.89 4.74 5.57 1.79 4.99 0.0 0.0 2.51 2.97 4.95 2.85 1.97 0.22 1.96 2.89 1.9 0.0 21.23 4.5 0.0 2.29 3.0
AAL19527 (STM0576)
 2.51 12.72 4.02 1.34 1.34 1.41 0.26 3.21 2.91 5.36 8.57 0.47 1.83 1.08 0.63 0.0 0.34 0.48 0.34 0.81 0.97 1.3 0.0 0.0 1.6 0.97 3.5 1.48 1.04 0.15 1.05 1.64 1.04 0.0 11.42 2.01 0.0 1.11 1.87
AAL19528 (STM0577)
 7.76 13.73 6.03 2.23 2.9 1.17 2.59 8.14 5.14 5.63 10.68 0.37 5.95 3.35 1.21 2.06 1.69 2.71 2.47 3.94 2.41 2.97 0.27 4.83 3.54 1.69 3.8 4.77 1.69 0.67 2.73 4.62 2.23 0.94 31.71 2.37 12.22 2.33 4.94
AAL19535 (entD)
 39.04 72.76 13.0 8.79 6.37 16.82 42.81 59.07 9.63 7.38 31.52 3.52 12.64 84.79 5.48 10.82 8.54 5.42 6.4 7.77 18.3 48.92 1.66 20.52 13.1 12.0 10.57 10.11 10.24 2.88 6.04 9.67 8.98 3.4 9.18 4.68 45.81 6.16 12.59
AAL19811 (rimK)
 41.03 48.34 16.76 21.8 27.58 8.67 19.36 42.54 32.6 26.88 26.96 50.33 35.85 77.29 22.87 7.9 15.31 33.85 31.59 38.58 23.3 25.43 12.77 65.41 20.04 33.48 88.51 27.47 27.78 4.72 21.49 24.72 36.14 8.05 20.03 64.8 82.63 27.52 47.43
AAL19914 (cmk)
 154.99 110.64 85.13 77.31 147.51 48.91 75.85 130.84 256.16 65.28 318.35 209.67 240.59 234.97 75.16 39.61 28.84 53.02 50.71 56.85 62.57 40.23 45.06 173.97 54.91 149.99 254.62 191.15 103.76 76.11 44.86 115.31 117.64 33.9 46.44 200.49 175.08 81.77 247.99
AAL20016 (yccX)
 40.61 109.82 44.9 22.29 25.15 15.04 65.71 47.57 30.12 25.82 54.99 11.94 60.08 44.38 66.79 38.36 24.92 42.65 55.78 64.25 37.79 73.53 11.48 72.17 47.53 18.52 24.58 46.1 30.81 0.65 18.12 29.43 24.2 17.25 35.45 21.59 85.24 24.33 50.39
AAL20045 (scsA)
 63.75 86.92 33.53 17.28 22.26 7.9 41.42 55.02 23.97 45.27 47.15 42.87 94.19 90.42 27.05 7.43 27.56 27.28 21.29 31.72 26.73 71.14 11.42 47.77 26.34 69.26 26.02 49.13 29.36 7.77 13.79 34.93 29.31 5.26 33.49 32.66 58.32 21.49 72.17
AAL20100 (mviN)
 22.25 41.9 17.22 13.05 17.92 4.91 16.95 29.95 16.64 17.33 15.87 26.53 25.76 59.77 22.41 18.05 11.64 26.71 31.41 32.63 13.46 21.37 20.31 76.11 16.1 24.51 24.31 30.33 23.5 3.79 17.39 17.82 23.86 19.29 96.59 14.65 89.76 17.94 39.81
AAL20226 (STM1301)
 56.49 260.86 265.25 48.44 44.18 10.1 33.13 62.87 63.68 99.0 116.58 69.77 80.82 45.23 11.14 33.46 32.6 62.62 56.98 56.99 18.72 59.66 4.49 32.38 38.71 33.11 58.81 120.06 75.2 3.91 56.62 374.98 88.15 38.97 41.15 212.32 62.38 38.5 89.23
AAL20271 (ydiE)
 461.28 518.86 359.97 75.09 135.67 28.66 156.75 94.38 60.31 10.75 198.14 7.8 311.34 139.44 70.67 58.04 17.17 85.37 31.53 54.53 288.41 372.69 4.38 134.15 137.87 65.56 35.25 260.99 28.26 29.59 31.39 420.39 22.23 12.65 27.65 31.46 263.92 146.37 411.95
AAL20312 (orf70)
 74.71 300.67 141.07 72.8 134.05 12.44 248.84 115.96 59.9 128.59 58.11 34.72 153.18 154.64 94.62 201.35 106.6 256.4 423.64 470.71 47.1 151.45 260.11 414.92 74.62 69.95 239.84 145.58 43.49 26.08 54.68 147.15 32.98 233.85 181.38 298.48 239.04 115.03 225.58
AAL20377 (ydgP)
 70.85 75.3 31.15 36.14 78.75 79.59 50.9 90.73 36.2 36.28 30.49 41.19 22.25 151.61 27.79 45.48 23.18 26.77 51.19 39.13 46.03 87.36 27.36 49.83 29.14 65.72 33.22 31.17 47.83 10.51 26.68 44.76 40.66 17.28 40.69 29.38 51.71 62.37 30.19
AAL20611 (sapC)
 21.97 41.05 24.66 17.12 26.89 12.12 17.76 42.64 15.04 16.91 18.12 40.83 25.95 60.34 13.93 8.11 8.78 16.4 18.69 20.81 9.18 20.8 6.95 47.21 9.43 27.05 20.54 21.39 26.42 7.37 18.82 27.42 23.94 5.58 12.54 20.9 75.35 15.05 28.29
AAL20892 (fliQ)
 51.16 111.49 41.41 22.51 19.33 4.46 66.38 25.15 28.45 33.55 43.1 103.16 14.62 14.15 29.27 60.71 27.57 41.22 27.75 30.8 12.77 60.39 51.87 48.38 10.61 9.07 84.32 32.28 34.17 4.64 19.0 70.22 34.69 51.86 42.44 54.69 76.8 9.35 17.13
AAL21203 (STM2302)
 34.89 128.53 112.25 33.04 28.52 92.83 48.76 100.08 28.31 43.14 48.38 21.76 44.27 152.12 18.1 40.37 26.57 34.71 45.68 44.99 56.28 186.57 12.38 105.9 51.7 41.47 62.34 31.01 66.14 4.01 18.01 45.21 69.02 12.45 48.66 37.15 116.54 19.47 44.42
AAL21268 (dedA)
 64.16 82.09 32.88 50.79 42.79 49.59 58.63 57.39 38.48 43.04 49.47 48.6 40.62 77.72 31.71 54.53 17.75 38.8 47.37 47.14 38.37 68.78 62.32 106.81 40.26 69.44 54.37 36.47 67.28 20.97 14.9 34.3 73.28 41.38 22.89 26.66 156.0 49.28 42.91
AAL21287 (yfcN)
 65.96 76.29 56.18 33.92 40.61 15.21 36.12 91.88 55.89 43.41 91.93 50.81 78.5 100.28 46.53 36.68 16.7 36.75 39.84 47.37 44.65 36.14 44.78 80.06 63.3 34.82 50.82 44.86 55.33 3.74 32.73 54.43 51.97 42.45 24.36 63.5 99.49 39.89 68.81
AAL21319 (yfeH)
 34.64 48.45 21.36 17.86 19.46 7.58 19.41 34.99 37.71 15.4 61.89 34.82 33.29 53.08 27.36 13.83 17.48 21.82 21.9 26.85 6.94 29.35 13.81 62.34 16.24 25.81 27.89 21.46 31.29 3.96 16.42 25.49 29.89 8.69 32.41 22.74 87.71 19.07 30.78
AAL21320 (STM2426)
 144.22 197.67 228.46 86.28 149.81 40.21 74.03 151.34 164.39 73.97 87.1 117.36 164.17 162.27 66.91 67.28 41.51 51.2 66.65 62.6 50.58 181.73 60.65 135.27 63.13 124.32 94.0 100.95 124.42 21.85 44.16 129.51 95.54 66.18 43.98 75.72 306.37 159.93 170.76
AAL21694 (proV)
 99.41 89.15 14.74 50.75 1.71 4.34 84.07 52.74 75.01 105.39 242.54 6.51 4.83 39.78 96.64 21.03 5.49 167.32 234.45 219.75 0.64 30.96 4.44 49.35 11.09 16.15 2.64 127.13 39.07 26.5 46.65 6.26 47.04 12.22 9.39 62.19 75.53 4.72 2.65
AAL21695 (proW)
 68.44 75.4 12.68 40.59 2.46 11.36 18.07 42.27 55.46 96.16 159.89 7.75 4.15 32.46 11.75 3.99 3.0 32.44 47.76 38.65 2.75 19.32 0.45 33.44 8.03 12.25 3.98 66.58 31.49 15.06 30.09 5.66 39.14 1.66 4.22 39.05 38.8 6.58 2.38
AAL21697 (STM2812)
 20.18 33.54 12.05 7.64 7.67 3.4 12.32 17.49 13.39 6.48 19.3 13.74 23.27 23.32 15.29 3.81 4.45 10.81 11.64 12.6 6.55 8.26 2.43 37.03 10.14 11.8 21.97 16.49 11.34 2.22 6.0 11.92 13.15 2.72 7.44 14.8 77.43 7.34 24.26
AAL21700 (emrB)
 38.0 40.81 6.87 14.88 20.66 6.48 33.82 36.1 29.13 11.86 34.93 85.41 8.85 45.56 27.38 10.63 12.32 11.3 14.91 12.5 8.01 15.89 8.78 49.86 10.0 19.85 26.95 37.23 16.9 5.82 14.72 16.36 20.09 5.11 21.19 20.55 61.57 10.09 22.84
AAL21865 (ygdL)
 50.21 72.79 21.82 31.42 17.71 10.24 70.54 62.34 29.59 25.43 24.69 72.26 38.95 107.17 52.53 17.52 63.61 59.67 64.22 64.06 26.48 35.03 12.28 71.15 20.97 39.02 50.29 35.23 51.5 10.99 23.25 23.16 45.99 15.68 84.87 39.87 102.02 20.15 37.88
AAL22137 (yraN)
 46.31 151.54 74.31 47.38 40.21 23.76 76.65 97.16 39.46 50.81 33.92 60.34 57.68 126.15 67.82 12.38 46.74 57.62 59.3 63.19 19.95 148.84 7.34 111.79 14.56 58.29 57.84 40.19 56.68 13.07 14.91 59.07 44.79 7.9 46.29 36.58 133.06 53.93 55.93
AAL22182 (yrbF)
 101.67 72.57 27.43 49.09 26.16 16.83 39.76 69.36 58.48 47.52 72.38 83.83 40.99 131.15 53.38 8.72 83.96 38.78 66.13 44.15 12.13 47.75 7.24 80.11 18.06 79.36 97.54 65.97 70.02 29.3 18.72 35.05 94.55 6.88 83.4 77.27 125.49 24.5 57.59
AAL22193 (ptsO)
 112.27 216.95 280.5 84.77 166.77 163.99 221.12 142.96 61.44 77.98 66.52 105.63 334.14 122.8 99.39 58.31 47.97 75.21 67.61 91.85 80.17 298.18 33.5 130.65 79.19 106.78 108.14 85.34 98.94 12.91 36.49 253.81 86.97 32.35 86.55 60.31 251.07 143.24 245.42
AAL22369 (yhgG)
 284.49 852.05 390.51 270.95 157.65 986.32 747.53 195.5 94.77 78.37 59.26 32.36 159.18 186.68 232.16 180.94 222.58 337.78 271.92 330.26 1200.4 1792.77 34.19 231.38 752.61 159.92 441.55 248.71 542.25 267.1 310.16 277.0 191.81 17.38 325.32 261.95 801.66 158.03 185.2
AAL22441 (yhhS)
 25.57 50.96 13.79 16.25 22.79 5.61 20.73 34.96 15.49 15.1 19.25 18.41 22.24 62.94 42.25 9.82 21.96 31.47 30.41 36.83 11.08 33.59 8.03 65.59 23.58 12.57 14.68 21.41 18.15 1.53 13.75 31.29 16.9 8.34 19.91 16.67 108.39 17.42 44.82
AAL22583 (kdtA)
 121.58 82.84 37.8 39.2 44.45 12.36 44.11 96.1 65.14 54.53 77.93 126.94 57.95 168.19 66.48 18.04 35.38 38.75 47.04 56.51 8.58 58.31 24.94 89.41 10.85 72.04 79.23 65.64 52.17 41.34 33.21 55.28 61.86 15.96 51.74 97.15 113.13 35.57 84.09
AAL22652 (STM3794)
 23.67 43.32 23.38 20.26 40.62 5.1 17.72 29.63 36.62 26.24 44.66 15.26 24.29 29.0 30.44 15.87 29.18 35.24 38.92 51.54 5.41 22.6 15.85 54.58 8.87 24.7 20.95 29.76 23.97 5.16 11.96 28.46 21.62 12.78 34.55 22.84 95.79 56.86 29.82
AAL22735 (asnA)
 92.43 611.78 36.7 526.67 12.71 51.55 12.85 508.47 18.54 105.18 59.19 7.92 24.5 749.69 19.78 47.21 23.2 128.82 170.95 167.64 372.23 85.84 17.72 52.98 98.1 170.21 37.11 140.46 2279.58 4.83 166.09 18.3 1034.0 25.4 17.12 13.53 331.43 123.11 17.95
AAL22847 (STM4008)
 230.07 157.41 14.33 61.34 105.89 7.39 99.62 166.02 187.34 63.69 321.48 140.99 24.03 317.18 71.33 31.55 67.26 36.66 47.22 45.52 3.94 26.47 57.99 119.07 5.66 49.43 128.73 80.28 87.76 110.21 31.71 71.7 88.8 48.71 43.13 97.84 131.74 48.28 83.87
AAL22956 (yijO)
 18.3 48.28 21.3 14.47 15.68 5.88 32.79 35.36 20.98 19.95 25.45 21.17 34.87 46.15 32.46 17.33 15.06 27.78 25.08 29.67 14.82 27.39 7.64 50.6 17.44 20.49 16.62 21.73 22.83 1.23 14.21 24.72 23.38 17.43 22.63 20.9 84.59 20.48 37.52
AAL22969 (murI)
 65.57 99.3 62.47 50.42 77.18 19.73 59.65 79.71 50.86 77.44 59.9 120.72 96.7 74.18 58.68 35.5 20.35 37.31 35.75 42.22 23.38 55.77 49.8 73.28 26.01 54.28 70.47 75.23 79.68 23.08 40.98 114.21 83.26 35.86 24.54 73.94 81.35 49.05 139.99
AAL22970 (murB)
 24.89 72.91 29.22 28.3 22.79 4.7 49.18 42.63 47.99 45.75 48.47 48.44 46.88 52.23 42.8 35.61 26.93 42.75 41.73 49.44 13.07 34.7 55.08 61.81 20.51 30.55 30.09 46.99 48.3 4.78 20.89 39.71 54.13 35.17 41.06 36.63 104.79 29.73 57.18
AAL23007 (aceB)
 5.64 40.48 60.99 9.86 3.08 41.96 7.8 36.69 6.8 17.2 6.57 1.24 43.7 26.07 6.02 15.45 4.88 81.62 74.15 90.06 4.88 20.81 9.82 45.13 6.04 13.5 7.35 9.67 5.82 1.26 22.47 4.71 5.32 11.09 6.2 3.84 80.54 18.96 7.71
AAL23008 (aceA)
 6.84 50.75 131.96 10.85 10.17 89.61 4.75 46.81 9.64 20.48 11.26 3.14 94.32 35.36 5.29 13.65 7.18 50.23 43.37 59.29 5.74 43.11 4.7 43.23 6.7 13.16 10.87 12.32 6.85 2.24 15.63 11.5 6.29 7.15 5.67 5.97 58.56 39.55 17.54
AAL23009 (aceK)
 15.41 31.27 20.14 4.65 4.05 10.0 7.29 18.6 6.23 5.24 11.62 2.75 24.09 13.31 8.82 6.88 8.54 17.62 16.09 22.0 3.55 24.05 4.43 49.76 4.61 5.72 6.76 7.2 3.88 1.0 5.43 5.29 4.43 7.91 17.51 5.09 73.18 7.34 8.33
AAL23018 (yjbD)
 217.84 349.32 185.11 222.63 201.57 40.73 200.3 323.39 140.89 155.68 154.58 131.16 207.25 147.82 608.44 140.12 224.36 244.57 217.44 286.0 144.01 168.09 156.27 222.38 168.55 106.61 173.98 187.37 176.32 16.97 125.91 220.99 174.94 96.28 207.84 214.56 262.11 179.89 330.29
AAL23299 (yjgQ)
 87.81 79.24 59.08 60.75 35.42 19.81 60.98 85.71 62.0 32.47 38.27 109.56 66.95 119.71 95.26 22.33 65.05 62.91 68.92 72.68 33.69 41.23 16.08 118.68 36.79 72.19 106.3 61.29 74.29 18.26 30.16 43.61 79.58 14.49 76.92 72.38 136.09 51.52 60.54
AAL23319 (STM4501)
 23.64 121.06 39.85 13.27 37.21 5.96 7.05 20.08 43.28 56.72 72.1 14.15 52.05 4.82 26.19 40.44 13.19 33.56 25.02 38.43 4.48 14.1 24.64 68.13 9.22 8.79 7.91 37.24 9.83 1.86 13.89 56.08 7.96 27.73 73.71 6.19 114.77 32.95 48.66

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)