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Heatmap: Cluster_40 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19321 (prpR)
 3.36 21.92 8.77 6.18 1.84 1.07 2.24 6.01 13.6 15.76 14.57 0.56 7.03 5.34 3.13 7.57 54.59 14.92 12.01 19.92 3.87 10.86 2.33 23.98 4.33 10.47 3.69 6.71 1.57 4.64 8.41 1.59 1.66 6.59 59.56 2.6 50.33 6.79 2.26
AAL19446 (ybaL)
 51.16 80.72 35.27 32.05 18.69 9.3 17.46 66.1 31.75 70.2 47.35 26.2 54.98 85.3 54.55 15.63 31.88 45.39 46.96 84.26 96.17 144.05 5.4 55.49 57.6 39.14 15.25 48.35 35.07 9.04 26.57 18.73 32.58 12.26 31.41 21.28 76.57 32.51 39.51
AAL19552 (ybdD)
 191.22 605.09 1977.33 174.85 314.14 223.55 265.5 885.56 233.65 371.02 279.27 28.32 859.59 1432.68 83.83 646.85 414.97 520.85 861.13 866.18 420.02 833.47 157.57 194.59 320.34 254.81 86.46 369.58 165.94 60.89 363.37 277.34 222.46 495.09 579.89 100.64 244.55 644.45 226.48
AAL19614 (gltK)
 18.47 134.83 106.28 68.87 49.54 12.16 21.44 129.09 18.77 83.14 15.84 5.94 125.2 175.4 15.03 47.04 84.15 76.92 64.43 92.49 13.74 114.17 13.1 62.56 10.12 58.15 15.0 20.77 224.69 3.4 20.6 34.81 213.97 22.18 101.35 5.65 86.34 128.56 48.29
AAL19615 (gltJ)
 25.77 146.47 121.95 72.27 44.94 13.43 32.72 156.84 22.37 87.5 18.82 6.04 160.73 222.61 9.9 41.79 82.87 101.61 78.63 118.97 6.07 123.14 9.75 49.5 10.45 63.54 17.27 20.43 203.51 3.28 26.93 40.62 194.67 22.52 80.04 5.55 90.94 141.22 55.36
AAL19725 (hutI)
 39.02 73.71 141.04 36.71 50.13 13.95 17.22 46.56 50.79 88.29 41.07 19.02 81.78 35.5 48.25 15.83 71.37 48.11 48.71 66.76 29.09 61.08 8.29 38.5 36.06 57.33 16.27 56.91 13.88 4.19 23.48 62.14 13.02 13.39 47.0 32.55 44.23 64.69 39.18
AAL19726 (hutG)
 26.95 72.53 139.69 26.49 39.75 12.06 11.55 49.81 33.71 57.74 33.03 16.88 97.4 34.32 49.4 15.33 57.85 48.6 37.25 59.98 50.56 55.47 5.19 34.23 46.11 47.16 19.51 38.18 10.35 4.55 14.07 47.71 8.81 10.15 45.19 29.29 36.32 47.1 36.54
AAL19727 (hutC)
 43.45 74.08 168.36 19.89 55.48 8.54 16.23 38.9 42.17 50.86 64.41 13.99 134.54 43.61 59.84 18.84 26.65 30.04 27.39 39.34 27.83 48.2 7.24 31.45 43.87 40.19 15.94 52.16 10.37 4.48 22.78 64.42 9.07 14.98 30.75 19.08 69.04 58.92 56.64
AAL19800 (deoR)
 62.69 95.74 61.56 33.53 38.48 21.82 79.92 101.46 41.45 46.67 64.56 62.31 84.0 167.79 67.99 62.65 36.49 67.03 87.43 101.54 50.82 174.69 34.02 50.76 61.2 79.93 46.59 69.48 52.11 21.64 44.4 46.07 56.63 53.87 45.72 39.12 66.11 29.25 74.9
AAL19801 (ybjG)
 42.28 97.33 57.33 24.15 57.4 33.57 27.66 58.31 22.48 36.77 31.52 27.51 57.76 99.8 19.63 73.22 19.2 26.7 38.19 40.69 64.16 158.41 32.24 37.84 72.96 69.63 31.32 85.56 53.75 6.88 25.99 59.83 54.07 23.56 18.29 19.74 58.66 22.5 79.64
AAL19876 (ybjX)
 284.68 494.17 634.09 308.38 304.39 205.88 896.11 678.71 158.81 180.0 198.07 291.06 329.24 859.11 1038.14 734.75 378.12 1039.23 1225.2 1196.93 311.73 277.83 495.7 224.82 339.8 667.34 332.27 416.47 345.62 277.03 459.1 270.17 345.85 661.47 461.85 208.71 214.41 184.73 273.18
AAL19889 (STM0954)
 205.45 309.48 64.57 63.57 63.43 18.78 223.3 250.9 69.41 57.57 139.96 81.19 199.25 361.98 286.96 87.37 148.57 182.49 174.24 250.08 14.5 372.46 110.93 232.48 40.41 91.72 89.59 128.77 65.34 107.69 76.36 113.03 80.1 111.93 235.67 76.69 521.94 43.38 192.77
AAL20195 (yeaS)
 91.95 192.74 83.16 62.59 66.64 57.1 106.07 146.43 53.27 83.85 47.6 112.02 72.07 236.63 100.46 170.98 98.64 184.98 191.63 241.5 167.84 138.52 156.69 105.34 125.38 113.32 124.67 154.52 100.73 15.52 58.36 69.85 107.88 165.06 116.24 118.16 107.57 42.64 116.37
AAL20201 (STM1276)
 129.71 260.42 237.37 93.77 71.73 33.52 75.12 208.55 105.7 143.47 134.92 78.83 140.35 204.27 206.04 139.73 58.52 182.58 240.39 238.5 316.06 606.61 53.74 107.96 375.07 135.93 117.11 110.85 143.66 24.34 111.54 109.64 115.54 57.28 64.76 128.08 182.63 76.06 93.59
AAL20232 (astE)
 2.27 33.74 42.2 3.48 20.35 1.01 1.76 15.37 2.67 10.46 4.46 1.11 55.98 7.49 1.11 8.94 2.58 9.09 7.67 10.5 7.36 6.13 1.22 24.45 5.67 6.91 9.43 5.66 5.09 0.25 3.26 6.31 4.56 6.62 1.47 2.64 30.05 59.71 14.4
AAL20394 (rstA)
 106.28 188.01 261.92 89.19 120.29 77.22 226.61 317.62 54.77 141.06 88.12 131.96 274.92 609.88 137.28 163.56 106.09 192.26 173.92 237.77 216.34 234.26 68.71 79.85 246.02 364.48 104.12 143.9 180.31 35.95 118.09 130.17 167.07 100.41 123.47 78.91 107.78 97.38 169.03
AAL20541 (STM1623)
 9.51 37.98 47.49 9.72 25.98 4.86 8.85 24.18 11.72 24.69 11.22 15.77 101.62 38.59 9.0 11.59 6.77 19.32 18.45 19.2 24.29 18.47 3.67 28.1 20.76 26.04 16.96 20.56 14.09 4.22 12.01 15.67 13.93 11.89 9.92 13.56 34.92 31.44 43.09
AAL20652 (yciC)
 98.81 123.41 98.98 85.03 86.04 51.34 103.35 169.24 65.13 76.45 80.66 102.28 133.44 276.04 95.58 116.04 99.23 78.98 70.71 90.67 148.82 251.11 98.83 111.31 125.15 132.33 178.51 112.93 135.42 29.88 59.91 91.19 148.01 86.34 147.55 119.92 160.34 84.96 143.23
AAL20653 (yciB)
 83.4 137.05 93.71 63.48 79.07 41.68 172.95 190.31 39.71 60.26 57.16 84.71 99.74 234.26 87.48 173.86 72.8 70.25 75.32 86.38 276.53 228.58 106.5 94.58 278.04 129.89 155.58 103.96 117.34 25.92 66.41 79.8 129.1 124.8 104.06 85.92 120.04 70.6 111.34
AAL20762 (yebR)
 190.73 193.4 190.63 150.55 176.89 69.84 227.12 375.17 108.87 146.14 133.31 126.51 172.21 537.23 410.84 125.36 190.32 180.63 142.1 194.27 171.34 391.69 77.99 137.59 224.09 271.46 118.25 158.41 190.08 72.74 98.2 189.09 228.48 89.63 219.44 161.43 151.16 141.18 215.06
AAL21088 (sanA)
 52.85 86.26 56.17 32.01 42.15 7.63 54.8 60.7 52.01 63.78 87.66 62.28 78.81 60.3 71.05 49.79 38.73 50.7 74.13 62.4 17.12 53.62 33.69 41.47 23.73 45.52 29.2 51.32 43.84 22.78 32.86 77.4 44.12 50.3 37.66 31.0 52.31 39.36 88.97
AAL21099 (STM2195)
 20.45 92.21 24.21 13.26 11.59 22.31 22.39 58.48 16.37 23.64 22.72 10.11 28.66 73.69 24.76 26.82 13.19 27.56 33.22 33.85 25.53 263.47 17.13 30.65 20.67 17.15 18.62 25.78 17.47 2.06 57.88 18.97 16.38 22.16 27.76 16.63 41.61 18.73 29.54
AAL21197 (ais)
 265.62 215.69 111.15 104.92 68.71 29.42 106.23 138.24 19.51 29.35 22.75 28.59 67.94 180.94 146.3 85.8 105.73 237.68 222.5 291.03 45.97 50.4 55.82 61.38 90.53 104.41 228.39 120.2 104.42 20.04 25.75 106.55 128.28 19.91 100.83 108.23 133.99 11.15 132.87
AAL21198 (yfbE)
 128.87 143.52 226.24 80.3 89.09 90.53 39.37 174.84 28.07 104.22 29.15 36.15 61.79 256.55 86.63 70.63 68.64 110.21 136.32 141.33 54.19 175.21 23.01 41.5 69.89 190.01 133.39 157.27 132.0 24.64 37.93 106.65 137.91 11.62 36.63 77.98 71.87 15.26 114.33
AAL21199 (pmrF)
 95.12 187.04 222.12 86.5 63.79 213.03 52.2 166.78 27.77 131.41 18.95 33.61 31.46 265.45 100.35 86.0 71.43 90.64 124.48 124.3 52.38 242.15 31.13 47.99 61.89 153.43 90.68 86.52 96.93 19.3 32.84 59.48 109.33 14.71 38.25 50.6 88.49 17.64 61.7
AAL21200 (yfbG)
 110.17 217.94 314.06 133.1 92.65 459.73 39.44 225.05 36.43 174.27 22.34 51.12 32.88 385.04 70.27 123.92 37.75 71.82 98.28 101.29 95.18 259.42 62.05 51.35 87.65 208.3 132.43 136.87 215.21 17.34 45.31 86.83 222.94 22.65 20.95 62.21 96.98 24.06 69.76
AAL21201 (STM2300)
 94.0 175.66 213.41 88.54 59.82 340.11 30.02 166.9 22.52 88.56 18.52 43.92 31.97 282.96 54.88 58.47 32.19 51.26 83.0 84.28 58.17 244.07 23.98 43.51 56.11 154.14 92.39 86.14 139.87 12.32 30.26 73.33 156.82 9.72 20.94 39.55 83.05 15.48 59.56
AAL21202 (pqaB)
 28.83 80.05 49.95 26.46 18.94 71.06 26.7 69.91 9.63 30.17 11.22 20.99 14.62 114.46 28.17 42.56 21.33 34.97 39.15 46.09 33.98 96.78 22.32 60.56 29.85 40.64 55.34 31.55 40.5 5.58 18.34 25.8 47.43 11.96 23.85 23.21 86.71 6.82 26.19
AAL21249 (yfcF)
 35.99 92.41 142.03 51.86 41.58 55.96 89.81 126.02 37.43 50.73 34.15 19.39 120.16 217.63 61.33 53.12 59.36 79.87 72.09 100.21 131.6 109.49 15.5 59.38 126.44 80.61 52.79 67.3 101.37 2.48 46.37 70.12 84.97 22.29 56.31 45.31 100.16 58.81 85.77
AAL21341 (STM2447)
 40.26 58.72 47.39 35.35 38.9 48.37 38.14 69.69 67.94 58.79 101.47 48.65 41.51 89.65 56.13 20.87 33.5 44.09 51.18 47.28 66.57 192.99 56.89 53.33 82.15 61.73 38.99 65.71 32.26 10.31 38.11 35.78 28.88 15.84 32.01 35.84 75.3 56.61 35.22
AAL21386 (STM2492)
 74.78 108.97 68.41 22.05 41.97 7.65 51.25 64.91 38.32 55.61 56.13 34.78 62.59 101.85 22.07 5.26 18.04 14.75 21.99 21.43 15.85 112.19 2.15 29.2 27.2 35.9 29.16 48.2 40.81 3.75 18.29 67.88 39.31 3.64 45.25 27.64 51.44 37.69 94.79
AAL21669 (tctE)
 8.02 38.11 40.66 10.1 16.1 3.38 8.54 25.96 22.92 26.2 27.61 3.55 36.76 38.17 11.64 7.85 41.42 25.06 22.76 31.5 4.16 22.57 4.03 35.66 6.63 13.65 5.57 12.36 5.55 4.89 14.3 15.1 5.47 7.41 41.01 6.19 57.66 31.97 13.34
AAL21675 (ygaF)
 2.86 50.32 101.86 4.58 8.85 14.03 3.14 8.63 4.67 15.27 7.37 1.16 134.38 8.84 1.73 2.6 8.03 15.29 10.44 14.18 15.22 21.17 0.43 20.94 8.5 22.57 4.56 5.65 2.36 0.9 3.39 4.09 2.04 1.41 8.99 3.14 33.35 43.26 6.66
AAL21678 (gabP)
 2.77 34.77 64.23 3.1 12.97 6.63 2.69 7.83 2.68 8.9 5.53 1.0 94.07 4.38 2.3 9.32 2.61 4.93 5.5 7.51 9.94 14.86 2.32 48.85 11.77 6.33 3.89 8.03 1.84 1.36 2.69 5.64 1.76 14.33 2.4 2.96 69.39 24.64 9.09
AAL21679 (ygaE)
 18.43 45.06 57.08 9.73 14.74 10.87 12.57 14.59 13.37 10.16 25.84 4.49 101.6 17.88 11.6 28.37 6.94 22.81 24.65 27.22 37.08 20.42 1.7 32.21 38.31 19.97 10.57 51.22 20.13 2.5 16.43 14.0 18.11 21.62 10.28 7.17 59.06 24.57 25.55
AAL21681 (yqaE)
 190.81 196.74 1121.36 17.44 93.01 7.38 14.52 36.02 19.84 8.21 35.05 6.97 975.47 4.99 0.0 39.55 0.0 0.0 0.0 0.0 143.23 55.54 584.29 390.03 112.43 2.88 33.23 545.26 2.54 52.84 48.46 109.24 3.21 88.29 0.0 41.51 939.33 251.83 243.27
AAL21836 (relA)
 99.21 165.06 189.14 135.73 101.28 112.9 111.87 236.4 99.66 130.01 100.91 75.08 148.07 304.06 187.23 96.07 118.44 175.82 160.9 190.92 165.56 237.38 68.51 75.07 113.8 167.28 82.05 153.26 212.57 29.58 113.98 139.92 173.41 64.74 104.21 70.9 113.68 126.58 239.83
AAL22001 (STM3127)
 16.54 52.96 64.67 20.53 27.85 37.55 19.22 32.16 33.44 23.12 58.34 8.64 36.33 35.77 21.12 29.5 17.42 15.83 15.9 19.6 26.41 19.47 17.2 59.04 36.35 27.28 16.94 25.51 27.54 15.06 20.26 24.97 24.3 24.92 11.61 17.81 114.92 36.61 22.13
AAL22078 (cca)
 49.81 72.84 69.53 37.27 35.99 14.31 38.23 66.9 36.57 42.16 62.06 41.72 106.35 81.62 107.54 21.21 30.49 50.14 46.49 55.31 59.72 214.27 30.92 47.11 58.57 47.3 44.68 72.42 41.47 9.27 40.13 54.13 41.34 15.65 30.3 39.79 67.8 36.1 69.55
AAL22098 (ygjU)
 81.59 189.01 126.68 89.93 54.91 33.4 26.79 173.71 70.86 119.84 45.0 73.95 211.22 362.34 50.26 44.77 92.59 103.09 89.91 120.76 23.52 122.09 13.37 66.5 55.4 98.2 31.69 65.62 253.22 5.39 39.09 88.13 272.05 29.51 57.61 25.63 90.74 87.22 192.25
AAL22099 (yqjA)
 122.07 152.49 162.76 57.76 62.75 34.04 50.94 195.0 83.75 74.07 111.17 67.92 139.7 241.06 81.45 97.71 52.37 68.76 67.15 88.82 91.72 354.92 82.31 98.69 137.44 149.87 40.44 110.68 125.63 23.12 93.36 96.39 118.75 74.72 76.01 35.96 113.71 70.18 111.82
AAL22100 (yqjB)
 159.57 133.47 163.99 72.47 104.21 36.98 34.22 245.0 93.15 77.88 78.42 86.21 141.86 318.32 54.86 162.8 38.58 46.23 38.09 50.01 118.69 253.33 142.21 66.93 122.36 173.28 57.52 145.74 174.38 40.43 59.84 123.02 179.24 135.55 76.11 46.96 69.91 104.41 153.93
AAL22266 (yrdD)
 160.04 306.64 255.53 101.76 128.0 30.45 100.95 210.5 108.73 118.0 121.36 111.45 291.5 336.88 103.88 171.29 61.83 118.67 114.47 153.92 132.06 358.64 132.75 99.15 128.05 127.19 134.7 212.8 182.01 34.67 103.29 234.89 152.47 160.85 80.96 92.03 140.54 110.59 322.41
AAL22867 (yihZ)
 80.98 134.16 47.14 79.83 25.64 80.62 110.69 99.17 28.75 58.42 35.55 92.8 35.88 142.16 202.76 40.32 61.53 68.43 71.27 94.41 109.27 296.49 27.37 78.28 87.86 119.38 96.9 52.04 82.64 11.74 15.85 44.55 76.49 25.16 101.26 65.96 162.6 25.52 50.27
AAL22868 (yiiD)
 81.19 119.45 134.54 75.44 50.13 112.2 106.11 147.32 57.1 70.53 95.9 53.91 70.06 265.74 181.73 88.54 83.37 101.25 99.0 99.52 111.09 253.86 50.36 72.09 76.56 119.69 93.26 87.12 74.26 7.7 41.15 66.61 65.49 43.61 137.49 70.27 148.83 70.45 79.3
AAL22957 (yijP)
 46.01 152.82 42.43 78.59 65.06 47.77 129.39 154.83 54.46 54.11 52.79 131.86 33.05 266.56 102.88 58.01 73.32 87.67 118.55 100.84 30.51 202.29 37.96 65.09 43.53 184.32 200.17 75.95 115.61 17.32 36.21 56.74 140.52 28.61 128.67 83.63 119.25 67.01 72.92
AAL23115 (basS)
 108.83 104.36 188.17 56.71 92.44 85.77 49.78 120.58 41.43 67.21 47.85 62.29 67.91 165.03 65.35 73.15 54.66 32.47 37.84 44.62 48.41 230.41 23.55 59.23 53.56 163.31 63.8 77.57 63.13 21.84 30.55 75.81 59.65 19.74 83.26 54.69 95.54 37.05 66.48
AAL23116 (basR)
 111.21 165.54 386.84 131.79 138.5 186.91 103.29 204.6 99.21 173.2 84.65 98.77 122.6 285.04 152.02 154.56 133.96 102.47 117.59 130.93 129.22 250.43 51.18 120.03 100.54 371.37 118.0 158.15 107.96 14.46 61.76 106.11 93.27 48.01 156.2 129.67 152.65 71.4 106.1
AAL23117 (yjdB)
 57.68 101.97 88.93 54.33 57.67 30.76 58.43 80.96 20.68 43.69 21.73 52.24 37.22 119.29 112.1 86.7 86.45 39.42 47.57 55.32 10.99 115.45 40.86 65.94 16.2 171.98 57.49 101.94 46.63 18.66 18.65 39.73 45.43 24.73 124.5 49.29 105.34 17.97 72.76
AAL23218 (cycA)
 164.57 108.27 105.1 38.94 49.79 20.06 24.58 66.74 60.02 60.17 49.96 40.85 108.72 110.34 17.84 37.64 57.61 43.32 46.23 52.39 19.29 67.94 17.26 75.53 35.34 72.93 92.89 55.26 74.12 6.78 31.38 43.0 92.86 35.87 81.76 43.95 123.34 65.18 66.07
AAL23249 (STM4429)
 3.25 3.4 19.8 1.52 5.43 1.95 2.68 10.43 6.27 4.98 4.35 0.0 12.2 17.38 5.57 0.0 1.88 0.66 1.88 2.02 5.49 2.94 0.0 0.0 3.1 4.11 0.0 8.03 3.24 3.71 4.72 5.49 2.12 0.0 0.61 0.0 0.0 8.35 7.9
AAL23359 (mdoB)
 65.42 139.56 152.58 47.82 49.78 70.37 63.75 167.19 57.53 72.94 78.73 56.62 102.58 326.03 125.65 91.74 121.59 55.22 61.22 72.47 124.53 315.77 42.0 77.47 106.86 232.31 67.88 68.76 50.21 21.78 76.94 53.55 35.88 51.05 90.54 80.87 93.73 83.63 61.97
AAL23403 (creB)
 35.45 88.56 67.19 42.35 28.0 17.02 26.8 70.96 70.83 55.06 88.41 48.98 46.95 114.22 52.35 15.07 54.38 36.39 40.78 41.69 32.56 172.95 16.95 50.91 38.89 66.64 32.05 64.63 73.36 9.56 25.14 44.26 63.16 10.26 65.0 27.34 81.61 44.02 45.43

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)