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Heatmap: Cluster_16 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19248 (STM0291)
 3.19 21.69 6.4 3.39 4.44 1.13 21.01 8.56 5.36 5.76 8.93 1.24 12.21 8.06 8.85 0.01 7.07 21.88 13.48 22.57 6.4 4.87 0.0 13.36 4.57 4.47 0.0 4.9 2.34 0.91 3.99 4.6 2.52 0.0 4.11 0.0 23.9 8.64 6.73
AAL19522 (STM0571)
 7.11 26.76 23.77 9.17 8.19 3.43 6.7 13.59 12.31 21.13 15.07 5.46 13.5 11.81 35.08 0.0 19.0 18.24 13.48 19.22 6.32 13.75 0.0 0.0 5.67 7.77 10.08 13.68 5.18 1.71 6.9 11.64 4.89 0.0 14.55 7.39 0.01 8.63 13.75
AAL19942 (STM1008)
 3.1 36.94 10.45 5.15 2.52 4.19 16.51 10.22 5.39 3.56 6.61 2.8 6.95 4.37 29.12 0.89 3.97 2.68 5.72 5.12 2.31 8.55 0.63 0.22 3.05 3.19 0.0 5.34 6.0 0.41 16.14 5.18 5.31 0.83 11.2 0.0 0.27 4.39 3.71
AAL19962 (STM1028)
 3.38 34.54 8.19 4.91 3.12 1.68 6.27 9.51 8.73 4.09 14.11 3.38 8.6 6.44 5.82 5.16 0.7 15.21 9.05 11.4 5.06 15.53 2.48 1.93 7.24 4.56 0.0 6.15 8.0 0.98 14.65 5.93 6.34 3.92 2.59 0.0 2.32 3.98 4.88
AAL19964 (STM1030)
 4.13 17.35 5.24 5.12 3.22 2.38 12.79 16.19 4.68 5.42 6.92 1.88 5.09 7.68 12.59 17.66 3.22 17.1 15.99 17.1 1.47 7.03 13.42 1.39 5.19 4.05 6.54 5.45 5.16 0.61 15.01 3.3 5.15 12.06 11.72 3.67 2.01 4.5 4.55
AAL19965 (STM1031)
 2.62 20.42 5.24 3.43 4.4 1.95 6.39 9.24 5.15 4.81 5.5 2.14 7.63 9.22 4.95 0.01 1.38 8.19 7.83 9.23 4.21 5.49 0.0 0.0 5.31 3.97 5.65 5.99 3.76 0.73 12.09 3.46 3.45 0.0 2.51 4.05 0.0 6.82 5.87
AAL19966 (STM1032)
 3.39 17.89 6.28 4.14 3.99 3.65 9.16 7.59 2.88 5.07 3.31 1.68 8.08 4.56 8.51 0.0 1.62 13.34 12.22 13.12 5.86 5.41 0.0 0.0 5.15 2.04 5.32 4.35 2.57 0.54 11.33 3.63 2.95 0.0 4.82 3.81 0.0 7.18 4.63
AAL19967 (STM1033)
 3.61 20.53 12.76 5.71 6.08 5.66 12.45 12.53 6.09 7.0 5.65 2.71 13.99 9.28 11.64 0.01 2.54 15.21 11.56 15.89 7.63 6.96 0.0 0.0 6.21 3.88 9.31 6.65 4.58 0.5 20.08 7.08 4.88 0.0 6.29 6.77 0.01 9.55 8.98
AAL19968 (STM1034)
 2.0 15.42 4.42 3.35 2.7 4.89 7.94 17.65 9.6 4.42 11.76 1.35 6.18 9.32 4.23 0.05 2.98 4.69 6.42 6.75 5.74 4.59 0.0 0.0 6.49 6.04 15.64 6.37 3.02 1.3 21.02 3.46 3.64 0.0 7.76 9.87 0.0 5.59 5.49
AAL19969 (STM1035)
 2.17 29.91 6.63 4.04 4.43 4.71 10.54 13.34 5.36 3.53 4.99 1.26 6.75 6.29 9.78 0.0 4.37 7.73 9.15 16.96 10.85 3.0 0.0 0.0 5.87 3.32 16.62 5.47 1.32 0.0 25.47 5.61 1.91 0.0 8.38 11.56 0.0 8.98 4.82
AAL19970 (STM1036)
 2.21 19.87 4.2 2.58 3.03 3.93 2.71 7.08 3.2 3.73 3.45 1.15 4.26 4.04 2.15 0.02 1.71 3.27 2.73 3.76 7.7 4.88 0.0 0.0 4.42 2.73 11.73 4.83 1.96 0.38 15.44 3.07 2.57 0.0 3.94 7.57 0.03 5.01 3.79
AAL19971 (STM1037)
 2.69 17.76 7.33 3.88 4.99 4.58 6.48 8.0 4.74 3.24 4.05 1.76 7.81 3.91 6.86 0.0 1.87 6.79 5.04 8.29 4.84 5.41 0.0 0.0 5.85 2.53 8.29 4.23 1.83 0.09 14.87 5.43 2.21 0.0 3.88 6.67 0.05 7.22 6.43
AAL19972 (STM1038)
 3.55 21.98 9.72 6.05 6.85 8.8 10.97 14.45 8.34 6.48 7.14 2.53 10.13 6.97 6.59 0.17 3.67 12.08 11.2 14.13 6.93 8.01 0.0 0.0 6.61 6.26 10.42 6.84 3.36 0.52 15.66 6.64 4.01 0.0 11.01 7.41 0.01 8.87 8.43
AAL19973 (STM1039)
 3.42 20.33 5.94 5.62 5.93 6.87 11.36 9.48 6.2 5.68 5.86 3.24 7.19 7.08 6.0 0.06 3.69 8.42 10.99 11.41 6.24 4.47 0.0 0.0 7.05 5.84 9.44 5.73 5.73 0.41 11.7 4.45 5.52 0.0 8.44 6.81 0.05 6.71 6.41
AAL19974 (STM1040)
 4.56 28.79 10.16 6.07 8.3 8.76 16.32 10.34 7.03 4.63 7.1 1.84 10.47 10.96 10.79 0.0 4.07 12.3 8.47 11.73 11.83 4.97 0.0 0.0 6.17 6.21 12.08 6.19 4.78 0.49 16.49 8.08 5.48 0.0 11.92 6.53 0.0 11.31 7.6
AAL19975 (STM1041)
 2.93 22.41 6.63 4.65 4.21 2.19 11.73 12.36 4.71 4.93 5.22 1.36 7.98 7.64 7.93 0.02 3.52 12.47 14.29 13.59 5.92 5.4 0.0 0.0 4.75 3.22 2.65 5.62 4.57 0.36 8.11 5.3 5.01 0.0 6.58 1.92 0.01 6.58 6.66
AAL19979 (STM1045)
 9.24 25.88 15.71 10.08 9.65 3.44 10.9 19.08 10.37 12.22 11.54 3.51 15.77 12.44 19.15 8.84 14.05 24.07 23.99 28.98 5.63 10.54 7.44 2.32 8.09 7.75 12.26 11.61 6.54 1.65 12.41 10.75 6.94 9.65 20.43 7.83 3.79 9.25 13.27
AAL19980 (STM1046)
 6.29 18.15 8.76 7.4 6.47 3.75 6.57 13.62 7.62 7.1 9.52 2.0 9.2 14.38 42.85 0.86 7.66 23.45 16.21 22.48 3.72 5.66 0.73 0.28 5.05 7.06 7.59 7.37 4.17 0.37 8.97 6.15 3.98 1.02 18.49 3.52 0.54 9.79 9.56
AAL19981 (STM1047)
 4.51 23.11 8.99 7.82 4.87 5.67 6.26 12.87 10.16 10.27 10.01 2.79 6.82 11.41 23.82 0.0 5.92 10.58 12.26 14.01 4.56 9.44 0.0 0.0 5.71 7.75 7.53 5.03 4.11 0.74 6.6 4.64 4.18 0.0 11.26 5.17 0.03 6.0 7.17
AAL19982 (STM1048)
 5.38 24.53 7.41 4.1 5.11 2.88 5.22 12.84 8.71 6.19 12.52 1.63 9.8 16.1 6.49 3.77 1.94 7.63 7.71 8.76 5.01 10.49 2.75 1.99 5.05 5.0 4.72 7.54 4.92 0.76 10.44 6.69 4.75 3.69 4.02 3.99 2.17 5.55 10.29
AAL19984 (STM1050)
 3.69 17.74 18.63 5.52 3.65 10.04 9.02 10.42 3.43 6.35 5.31 1.4 7.79 3.67 5.9 3.74 3.02 10.92 10.29 13.2 23.98 5.91 1.19 1.07 28.88 7.17 0.4 5.49 4.25 1.69 5.02 4.92 4.2 3.31 8.96 0.6 1.56 5.13 2.83
AAL21483 (STM2588)
 5.31 19.6 9.77 4.33 3.8 2.22 6.03 11.94 11.89 5.85 15.94 2.37 9.33 12.14 5.3 1.1 0.03 10.92 10.24 13.18 5.18 6.42 0.62 0.85 5.63 4.98 3.27 7.1 5.84 0.69 7.91 4.77 6.58 1.46 0.08 2.33 2.43 4.7 6.14
AAL21484 (STM2589)
 4.2 25.1 9.16 4.53 2.76 7.48 4.15 7.02 4.09 4.03 5.66 1.14 8.05 5.19 3.43 0.74 0.32 9.92 9.47 10.98 4.48 4.75 0.51 0.25 6.03 3.29 1.26 4.38 3.36 0.83 5.46 3.98 4.6 1.03 0.79 0.89 0.33 3.91 5.3
AAL21485 (STM2590)
 4.25 23.03 8.48 6.24 3.58 16.84 2.69 5.82 3.78 4.68 5.16 2.44 7.16 6.91 6.35 0.01 0.0 8.15 7.09 8.05 8.42 4.08 0.0 0.0 8.31 6.39 0.0 3.28 6.39 0.89 2.58 3.87 7.65 0.0 0.0 0.0 0.0 4.74 8.38
AAL21486 (STM2591)
 5.23 24.18 7.92 8.94 4.97 11.36 12.2 10.51 5.74 5.25 7.44 3.62 8.47 9.68 13.13 0.0 0.0 28.66 22.01 25.87 3.68 4.03 0.0 0.0 8.85 8.7 0.0 5.71 6.04 1.06 4.7 4.39 8.26 0.0 0.0 0.0 0.0 4.66 10.59
AAL21487 (STM2592)
 18.0 36.69 29.73 14.12 19.76 10.86 12.7 26.54 15.24 22.21 17.78 4.9 35.19 25.69 14.97 0.0 0.0 41.69 35.34 44.2 16.93 11.93 0.0 0.0 16.02 14.38 0.0 16.57 13.19 4.43 10.94 25.66 15.93 0.0 0.0 0.0 0.0 20.65 37.98
AAL21488 (STM2593)
 9.5 38.7 26.73 11.18 9.25 7.31 10.96 12.76 6.07 13.78 7.37 1.85 37.55 10.03 10.66 0.0 0.0 21.53 27.0 30.57 9.81 4.78 0.0 0.0 16.65 5.85 0.0 12.93 8.5 1.19 11.7 16.37 10.7 0.0 0.0 0.0 0.0 15.11 25.84
AAL21489 (STM2594)
 9.01 27.69 18.66 10.51 7.94 8.58 10.49 13.57 5.57 10.05 6.47 2.48 20.43 11.28 14.91 0.01 0.0 28.61 26.38 32.28 8.79 8.02 0.0 0.0 8.94 6.69 1.04 12.88 10.57 1.05 8.42 12.53 11.35 0.0 0.0 0.87 0.0 10.33 16.97
AAL21490 (STM2595)
 4.08 31.21 15.63 7.6 3.46 15.42 2.82 5.21 2.34 3.59 3.2 1.05 11.15 4.14 1.52 0.0 0.0 9.89 7.73 9.73 3.51 4.07 0.0 0.0 6.36 3.22 0.0 4.0 8.16 0.06 5.05 5.28 9.86 0.0 0.0 0.0 0.0 5.23 7.27
AAL21491 (STM2596)
 3.52 35.97 15.89 7.53 3.41 14.51 7.89 7.51 2.38 4.08 3.14 1.21 10.6 3.59 8.43 0.0 0.0 20.35 24.51 23.09 4.6 3.87 0.0 0.0 4.99 3.76 0.0 3.95 2.97 0.14 7.95 4.86 5.5 0.0 0.0 0.0 0.0 5.84 5.51
AAL21492 (STM2597)
 14.58 41.3 70.29 29.72 17.63 60.72 13.86 33.3 14.84 30.8 15.05 6.21 51.81 33.77 27.69 0.14 0.0 52.26 56.59 61.88 32.14 18.33 0.0 0.0 32.55 30.68 0.0 35.24 38.28 2.34 20.4 22.83 36.43 0.0 0.0 0.0 0.0 25.3 27.09
AAL21493 (STM2598)
 15.86 37.87 45.45 22.93 16.22 38.44 19.36 28.58 14.54 24.77 18.38 2.83 38.7 28.82 21.27 0.03 0.0 56.94 48.89 57.67 26.81 15.88 0.0 0.0 19.86 18.02 0.0 39.26 25.53 2.97 21.48 23.98 21.85 0.0 0.0 0.0 0.0 24.03 27.57
AAL21495 (STM2600)
 37.11 51.11 54.94 17.7 24.71 14.47 28.62 31.96 13.1 19.48 14.14 8.78 51.26 28.53 33.99 0.01 0.0 57.8 53.16 68.22 14.72 20.71 0.0 0.0 19.2 14.05 0.0 28.45 20.8 2.45 16.79 31.01 20.03 0.0 0.0 0.0 0.0 29.13 42.97
AAL21496 (STM2601)
 10.02 47.74 60.49 17.08 14.56 27.6 12.29 18.53 9.41 17.25 8.96 5.73 44.98 10.97 15.09 0.03 0.0 32.36 30.46 37.32 26.56 11.6 0.0 0.0 25.4 9.46 0.0 24.29 14.34 1.47 27.32 22.71 15.4 0.0 0.0 0.0 0.0 29.85 30.38
AAL21497 (STM2602)
 8.86 43.15 41.94 16.37 6.76 26.85 20.64 24.86 7.7 17.82 7.24 3.92 28.41 10.74 22.15 0.0 0.0 30.44 30.1 32.27 11.97 7.17 0.0 0.0 15.71 8.35 0.0 19.36 11.66 1.22 22.05 14.8 15.0 0.0 0.0 0.0 0.0 14.69 20.49
AAL21498 (STM2603)
 8.07 49.75 64.83 15.81 10.67 47.71 10.03 14.89 7.96 17.49 7.86 5.18 40.56 10.81 12.12 0.01 0.0 18.38 16.58 19.44 13.93 10.13 0.0 0.0 15.4 8.3 0.0 19.13 15.06 1.72 22.81 26.96 20.25 0.0 0.0 0.0 0.0 17.0 29.48
AAL21499 (STM2604)
 9.38 54.34 74.55 20.72 9.6 90.74 7.67 13.5 8.02 19.46 8.62 6.1 41.71 7.83 8.32 0.0 0.0 11.67 15.06 17.68 37.79 14.62 0.0 0.0 36.67 14.58 0.0 14.7 21.93 1.48 30.1 24.35 27.95 0.0 0.0 0.0 0.0 15.6 26.43
AAL21500 (STM2605)
 7.02 42.31 38.75 12.89 6.52 41.32 3.9 10.15 7.73 8.89 10.89 3.16 23.74 7.66 8.62 0.0 0.0 8.34 8.13 9.99 8.5 10.25 0.0 0.0 10.11 6.8 0.0 10.34 13.4 0.96 14.73 14.68 19.0 0.0 0.0 0.0 0.0 9.77 14.55
AAL21501 (STM2606)
 13.72 40.3 32.99 12.19 13.06 15.85 7.99 19.49 10.39 14.54 13.99 2.83 26.93 20.0 5.18 0.0 0.0 16.63 17.01 19.47 16.52 11.42 0.0 0.0 16.45 12.6 0.0 20.3 18.93 2.21 17.71 19.54 23.5 0.0 0.0 0.0 0.0 16.4 22.67
AAL21502 (STM2607)
 9.66 51.9 5.81 13.02 2.21 21.19 14.89 13.25 4.3 6.9 4.79 1.05 3.73 4.59 43.93 0.0 0.0 43.27 17.75 32.57 18.68 9.53 0.0 0.0 7.59 4.85 0.0 6.03 12.86 0.24 4.94 4.85 12.1 0.0 0.0 0.0 0.0 1.55 0.0
AAL21503 (STM2608)
 5.53 31.28 15.22 7.24 4.87 7.12 6.03 8.92 5.71 6.77 8.94 1.92 14.45 8.18 5.49 0.0 0.0 12.01 11.52 12.77 6.63 9.31 0.0 0.0 7.49 6.98 0.0 7.45 8.6 1.21 6.71 7.1 11.98 0.0 0.0 0.0 0.0 5.97 8.22
AAL21504 (STM2609)
 5.26 21.89 15.0 5.34 2.21 7.67 1.85 6.28 2.84 3.27 6.14 0.59 9.46 2.27 2.5 0.0 0.0 4.29 5.3 5.3 2.4 6.98 0.0 0.0 6.05 2.13 0.0 4.95 7.31 0.5 6.21 3.43 12.48 0.0 0.0 0.0 0.0 4.18 2.36
AAL21508 (STM2613)
 3.49 37.65 2.76 3.65 1.17 0.72 1.64 9.16 3.42 0.98 7.91 1.95 4.77 0.89 1.25 1.65 0.05 4.17 4.98 4.95 1.44 8.26 0.69 0.69 6.91 2.11 0.0 4.95 5.98 0.25 9.95 1.27 11.82 1.87 1.33 0.0 1.28 0.52 1.92
AAL21627 (STM2741)
 4.0 19.03 13.28 4.82 7.58 0.88 1.76 13.13 5.72 20.97 7.69 1.32 30.42 1.8 10.18 0.01 1.22 33.27 22.66 34.68 2.97 2.68 0.0 0.0 3.8 1.27 4.13 13.59 1.72 0.14 25.8 26.14 1.44 0.0 4.9 1.96 0.0 8.36 55.07
AAL21649 (STM2763)
 12.37 72.81 56.17 27.26 17.98 3.43 41.79 36.95 19.23 39.98 19.04 7.51 40.29 20.39 86.27 0.13 27.78 71.71 62.54 80.63 19.28 56.19 0.0 0.0 10.43 14.29 11.13 32.73 32.19 20.05 27.35 34.53 23.43 0.0 29.3 17.26 0.02 30.99 28.75
AAL22612 (STM3754)
 28.0 79.41 60.21 34.85 31.05 11.36 73.98 57.33 37.9 53.23 37.52 32.17 58.75 51.21 93.15 3.28 44.94 46.38 47.79 62.02 27.35 51.85 3.41 11.21 16.7 29.17 24.36 51.83 38.51 8.19 30.93 56.24 27.91 5.33 45.93 25.23 22.05 30.12 55.89

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)