Heatmap: Cluster_52 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19380 (phnV)
1.95 0.86 0.9 -1.04 -0.48 -2.4 -0.1 0.58 -0.08 -1.73 0.33 -0.5 -0.36 0.78 -0.87 -0.76 -1.06 -0.15 -0.07 -0.06 -1.56 -0.98 -1.99 1.47 -1.31 -0.55 -0.66 -0.02 -0.41 -3.09 -1.05 -0.4 -0.28 -1.83 0.76 -1.2 1.94 -0.73 0.2
AAL21181 (STM2280)
1.24 1.17 -2.01 -1.21 -1.4 -2.33 -0.98 -0.19 -0.5 -1.77 0.22 -1.94 -1.28 0.35 -0.39 -0.96 -0.5 -1.51 -1.11 -0.91 -3.44 -0.37 -0.22 2.13 -2.11 -1.06 -1.11 -0.06 -0.85 -2.02 -1.0 -0.95 -0.84 -1.27 2.78 -1.95 2.46 -1.93 -1.48

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.