1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_44 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

 Transpose table  Download table
Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19102 (yacG)
 246.72 427.75 596.47 298.32 540.63 115.6 1659.07 184.98 209.0 158.21 218.4 262.81 413.38 121.68 263.04 66.72 912.16 97.07 205.05 197.55 272.24 195.17 64.76 308.39 138.59 108.3 152.43 375.78 147.94 65.02 192.27 638.29 96.97 61.66 1446.82 201.66 339.16 819.68 654.75
AAL19105 (guaC)
 215.75 277.29 123.01 293.36 163.12 214.31 502.91 262.52 184.35 314.13 157.79 545.29 103.98 450.41 753.66 102.55 225.05 278.75 168.1 265.68 149.03 188.89 82.09 234.97 111.41 324.92 279.0 144.63 273.65 77.38 43.4 300.56 202.61 51.18 277.03 257.32 219.39 164.68 313.31
AAL19130 (speE)
 127.58 116.6 43.42 227.13 178.66 162.53 211.14 249.25 112.8 87.68 155.07 76.32 64.71 316.03 46.56 33.09 128.91 100.49 133.68 128.84 18.78 60.08 35.82 93.59 18.88 313.13 107.56 74.17 149.38 37.34 46.23 164.5 159.9 18.76 117.9 149.53 86.64 271.2 165.05
AAL19131 (yacC)
 136.98 102.44 110.42 73.57 87.66 13.9 220.61 193.37 81.5 62.25 128.95 45.29 207.5 174.18 306.84 185.12 396.32 181.01 158.0 225.48 65.44 71.08 167.91 147.62 118.72 75.88 101.83 115.39 84.95 97.63 46.58 178.36 105.41 160.97 452.45 95.05 162.56 97.84 205.21
AAL19134 (hpt)
 177.11 133.75 49.4 139.23 109.45 34.28 171.44 84.47 137.34 95.44 155.25 232.73 84.28 104.6 67.01 48.33 82.34 65.46 91.84 84.42 19.23 97.09 72.9 162.62 23.63 155.0 180.47 89.78 140.52 196.46 49.27 103.97 182.9 50.77 273.64 214.11 164.03 92.39 127.9
AAL19181 (tsf)
 2425.42 1263.41 250.76 3401.84 1671.41 1194.92 2357.8 1338.1 2164.19 1359.81 2272.85 1613.93 251.95 1361.89 1287.91 437.18 2927.84 1366.66 1606.75 1478.98 168.25 813.0 625.27 1325.35 143.31 2456.63 1712.65 773.9 1671.41 1332.4 313.3 1209.04 1388.19 304.55 2508.33 2017.67 1140.85 1297.27 1087.95
AAL19360 (yajC)
 532.51 571.09 372.31 1058.31 684.47 584.96 995.12 993.61 797.2 902.4 570.83 1059.61 455.13 1086.95 1314.81 196.43 1579.27 732.03 849.64 928.24 150.33 412.52 344.25 792.22 180.96 1167.89 941.62 672.46 692.45 364.35 174.36 677.81 646.67 259.93 1305.94 1084.27 616.15 607.29 854.97
AAL19389 (yajQ)
 195.75 317.41 358.04 344.41 363.49 164.65 398.0 266.12 374.56 305.74 403.86 359.16 302.77 271.62 453.16 309.69 572.33 184.98 176.07 214.44 76.92 114.79 388.9 300.02 117.03 323.22 346.7 230.17 267.05 242.43 81.69 372.3 199.13 298.71 502.72 692.31 220.13 491.79 428.8
AAL19402 (tig)
 933.65 727.32 183.36 1069.46 981.79 304.51 676.38 741.34 1284.61 793.93 1459.23 1601.34 309.04 862.52 703.64 224.76 2000.55 423.04 529.65 469.88 76.31 463.54 434.1 957.95 147.91 1407.21 1246.28 658.03 843.49 580.45 209.47 700.35 802.5 217.37 2206.1 1267.74 764.26 580.39 789.88
AAL19439 (ybaB)
 451.63 401.6 236.84 763.3 488.26 373.07 676.9 716.3 554.31 532.57 574.54 810.19 228.09 933.3 1416.8 144.31 2047.37 424.88 465.47 455.78 155.22 404.02 156.03 455.98 133.43 788.5 555.36 373.56 710.31 95.62 252.07 386.92 532.37 79.94 3877.8 607.28 390.02 340.71 538.05
AAL19692 (tolB)
 200.98 276.01 201.72 324.33 502.03 331.86 292.48 537.45 319.41 180.65 271.61 193.56 282.66 569.88 629.23 128.76 580.98 205.33 176.34 224.35 138.22 486.97 131.74 142.52 147.78 486.94 424.63 174.51 160.28 65.05 109.34 488.2 158.61 80.45 712.8 195.29 247.77 618.66 513.68
AAL19864 (nanH)
 3.92 0.0 0.0 0.0 0.0 0.0 0.0 133.61 0.0 0.0 0.0 0.0 0.0 12.58 0.0 0.0 160.05 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.54 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 323.86 0.0 0.0 0.0 0.0
AAL19893 (trxB)
 232.88 271.29 285.1 367.23 162.74 510.62 880.9 472.62 229.72 295.81 262.97 258.34 355.82 595.82 747.17 110.47 673.47 557.63 521.75 577.79 206.64 281.4 64.83 190.35 298.87 452.4 205.75 292.93 239.28 66.34 115.88 330.5 190.91 51.06 1025.21 244.93 204.18 212.26 415.65
AAL20065 (ycdW)
 50.54 72.78 47.22 113.97 66.6 108.47 93.41 64.16 52.13 120.27 62.18 60.26 35.54 99.21 74.98 13.71 80.44 102.27 81.74 105.39 7.0 41.52 11.34 74.15 17.99 165.69 85.45 55.63 54.04 10.9 24.29 77.39 44.38 11.36 138.06 86.8 90.97 108.43 67.58
AAL20080 (mdoG)
 96.88 154.65 135.94 114.02 136.13 94.64 1032.91 163.22 95.17 174.5 90.18 225.87 218.65 197.48 224.54 117.38 137.78 201.42 204.7 242.94 72.14 237.01 204.83 130.48 56.63 185.31 144.01 185.53 107.49 42.49 121.02 148.68 100.68 147.41 169.85 124.1 165.55 109.58 201.69
AAL20081 (mdoH)
 66.35 99.09 60.55 70.79 81.16 65.58 418.19 122.88 47.58 72.05 37.83 177.34 78.5 206.65 75.28 37.92 56.97 82.25 89.25 91.78 50.48 174.85 50.94 100.79 28.41 118.68 88.51 76.04 72.41 25.88 64.26 74.08 64.34 29.06 63.9 65.8 101.88 57.5 89.13
AAL20126 (fabF)
 578.78 457.92 175.42 611.36 394.57 436.55 517.85 405.34 711.73 395.57 724.94 945.41 280.35 560.41 441.87 140.94 658.36 319.16 378.55 382.5 165.38 357.96 211.17 502.3 157.38 783.06 923.65 381.7 618.93 194.88 141.9 330.06 731.12 169.35 2258.48 752.69 429.29 299.11 491.48
AAL20247 (yniC)
 48.47 67.55 78.67 73.94 38.44 123.84 69.56 79.07 43.7 80.04 51.18 85.42 71.07 122.75 80.82 34.2 78.15 70.28 58.36 70.13 73.5 92.71 15.86 60.03 59.63 126.85 56.38 91.61 63.99 23.64 44.49 38.19 55.8 18.89 67.89 50.18 94.23 52.56 61.86
AAL20259 (infC)
 9856.56 5304.48 5172.51 6202.84 10200.38 2874.03 7730.12 6302.99 4934.2 4216.83 4930.77 3486.48 4168.62 7309.91 7798.15 3032.8 11116.17 6503.07 7366.33 7694.7 1572.77 4864.64 4355.49 2807.52 1398.58 4434.1 4113.13 5778.67 3473.81 3554.59 3978.02 6700.17 3648.8 2696.79 11303.87 3967.04 2520.62 8665.83 7493.32
AAL20260 (rpmI)
 18063.78 16880.09 7381.18 16240.27 16553.67 10162.78 33881.45 14939.33 13868.07 6855.58 20911.98 10396.35 4975.67 22092.61 6073.09 6806.88 55639.72 5279.85 4418.35 5351.24 2743.2 13456.11 8599.1 8843.93 3517.85 5241.05 12156.47 10103.04 7139.71 13319.58 9937.39 10446.2 7099.36 5302.89 46047.6 12912.37 8095.15 14497.7 11081.35
AAL20383 (ydgT)
 781.69 663.37 229.03 293.77 606.31 420.03 1584.73 519.74 283.54 425.89 467.43 218.7 477.05 773.05 267.74 789.75 1712.78 290.85 508.08 517.68 679.52 1655.65 626.89 347.44 669.75 211.36 232.22 468.49 151.23 219.54 195.49 356.9 182.66 472.71 1338.36 217.21 515.46 392.92 639.88
AAL20449 (STM1530)
 4.27 33.85 3.86 13.52 2.52 35.74 172.61 7.71 11.42 2.4 10.28 2.24 2.9 2.91 10.85 3.99 13.01 5.2 4.91 6.84 1.11 10.25 6.93 26.91 2.2 2.39 14.41 12.61 1.42 3.73 3.29 3.91 1.62 3.52 13.42 18.34 67.08 2.63 2.98
AAL20731 (minE)
 297.0 859.07 829.26 432.37 630.0 527.89 427.73 491.11 500.65 946.06 412.21 313.23 541.39 573.57 436.04 378.78 2255.43 186.37 334.08 244.21 278.9 449.78 350.14 402.69 155.71 494.52 585.79 400.01 320.0 608.56 253.78 387.53 328.59 379.91 2400.89 731.7 446.89 880.73 348.65
AAL20815 (yebC)
 139.09 172.18 143.2 273.97 219.14 178.13 308.15 265.33 192.37 231.53 116.74 321.52 124.59 435.53 234.11 108.62 220.71 280.01 281.12 307.82 137.23 141.83 83.54 224.09 77.69 298.97 221.8 138.64 295.54 42.91 105.66 110.34 358.94 64.08 148.29 221.3 220.47 221.85 106.02
AAL20861 (yecF)
 336.63 311.42 103.55 358.09 122.33 127.5 1761.93 248.11 164.26 269.78 234.21 388.48 259.83 60.83 395.99 157.45 1080.22 344.85 455.79 472.15 39.14 192.96 207.81 686.26 59.81 215.43 772.44 164.85 413.78 1372.94 99.32 213.5 612.81 197.48 941.68 674.83 678.51 78.58 190.63
AAL20876 (yedD)
 75.29 110.9 82.44 138.18 125.58 107.88 158.93 125.68 62.36 88.12 70.23 173.9 135.38 164.49 107.05 18.33 166.13 102.69 169.64 151.84 86.74 70.76 14.27 147.18 114.34 220.9 152.81 70.07 196.27 25.04 35.67 84.95 247.4 12.93 120.22 157.16 132.31 86.56 153.72
AAL21051 (STM2148)
 96.99 173.83 147.87 123.01 39.16 106.66 738.67 144.08 87.37 75.44 142.81 125.98 88.26 108.97 162.18 61.26 461.28 68.14 90.07 89.7 116.97 107.4 65.45 200.44 263.86 187.2 260.0 93.19 104.56 63.82 31.48 43.88 115.66 47.58 552.19 261.58 249.15 44.61 41.96
AAL21114 (yeiP)
 95.46 116.62 48.45 109.38 83.43 83.06 328.9 151.57 95.6 69.92 111.17 111.74 63.97 208.01 422.59 21.08 463.98 147.07 106.06 152.15 24.05 97.36 43.0 149.39 26.03 121.27 207.98 54.75 54.4 22.71 25.8 80.11 59.13 18.7 804.91 168.84 302.46 46.75 119.28
AAL21247 (STM2346)
 170.52 201.25 196.06 180.4 82.49 206.06 224.22 228.32 108.84 149.25 133.57 200.72 145.29 386.41 331.56 85.78 235.8 239.28 170.78 216.37 163.07 282.82 44.66 130.74 203.53 198.34 270.11 103.14 186.64 44.67 84.25 86.59 182.62 47.72 276.71 259.21 157.37 108.94 122.62
AAL21612 (STM2726)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 275.66 0.0 0.0 0.0 0.0 0.0 217.38 0.0 20.52 1544.16 0.0 0.0 0.0 0.0 0.0 344.66 55.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 33.64 1176.74 0.0 60.96 0.0 0.0
AAL21618 (STM2732)
 0.0 0.0 0.0 0.07 0.0 0.0 0.0 20.79 0.0 0.0 0.0 0.0 0.0 1.28 0.0 0.0 74.31 0.0 0.0 0.0 0.0 0.0 0.0 22.18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 7.51 0.0 52.16 0.0 0.0
AAL21805 (nlpD)
 955.17 1004.38 2419.45 907.73 1087.83 863.26 2202.25 3455.43 626.63 903.31 763.33 170.61 1870.77 4607.45 871.77 894.18 1260.99 1742.73 1770.99 2060.54 442.01 1236.93 509.79 766.35 501.86 1001.53 352.85 1785.62 904.13 378.37 1069.28 782.37 856.11 624.28 1174.92 474.4 741.12 1906.65 788.21
AAL22163 (secG)
 2916.4 1550.37 1122.64 1252.09 1014.25 471.08 4909.12 2091.1 2511.73 741.29 4005.78 4716.24 1486.42 3027.06 4660.23 536.48 2364.79 1949.62 1525.16 2495.05 931.31 893.32 826.83 1635.31 994.81 2159.35 3109.4 913.09 1382.92 7004.3 716.62 1530.91 1676.61 676.1 3228.36 2082.14 3015.91 654.37 2052.43
AAL22168 (yhbY)
 724.72 449.64 259.14 502.19 374.96 150.98 1475.04 786.58 331.89 349.11 604.82 702.34 473.54 960.76 1327.82 353.59 1263.19 766.41 1099.9 1102.6 170.07 251.53 605.83 738.61 168.94 485.69 573.86 709.78 547.67 1833.63 197.71 481.01 653.25 513.67 1711.36 486.17 713.49 286.95 664.25
AAL22169 (greA)
 341.37 247.6 130.0 314.44 163.04 126.18 542.81 289.74 212.92 209.2 392.47 283.63 240.16 292.18 338.48 203.4 612.27 334.14 370.97 390.53 134.86 202.17 195.82 214.76 128.18 268.22 222.17 287.55 373.28 480.93 197.75 145.82 449.03 247.1 602.75 142.42 308.41 162.87 223.98
AAL22189 (rpoN)
 219.01 157.2 369.96 173.37 172.2 250.16 218.61 325.41 114.13 160.14 120.1 138.37 344.03 427.07 319.59 117.73 245.13 146.52 146.0 163.08 81.92 159.43 98.52 146.87 98.7 184.68 107.27 177.15 189.63 45.99 80.2 205.29 175.71 86.7 295.3 118.43 157.92 255.16 237.16
AAL22191 (ptsN)
 187.68 240.35 339.27 269.51 202.68 332.44 395.01 336.69 173.93 255.23 145.3 141.28 347.58 505.75 259.51 95.62 263.54 144.82 171.56 191.67 100.22 254.29 60.93 156.54 92.66 246.38 148.56 213.33 246.17 23.57 81.59 260.92 217.33 55.16 409.97 155.39 168.22 273.64 237.78
AAL22318 (slyD)
 847.37 764.23 426.93 1118.02 791.37 531.61 1900.28 815.19 676.98 511.81 895.39 1287.38 589.2 628.08 2505.02 246.02 1626.21 1003.79 1093.43 1236.31 373.89 406.83 276.09 987.37 285.53 741.24 1683.34 655.29 971.28 104.16 246.85 754.4 871.77 199.01 2326.98 1821.0 1005.22 396.51 1130.16
AAL22319 (yheV)
 433.75 445.37 729.95 225.63 550.68 347.96 1716.29 487.26 340.92 114.47 568.53 87.5 500.97 664.01 101.72 255.66 818.98 81.47 114.23 105.02 1696.84 408.33 106.47 271.27 387.88 175.35 210.65 543.49 136.16 39.78 303.02 663.42 137.96 128.85 1168.0 206.45 553.5 566.97 714.98
AAL22343 (trpS)
 116.34 165.71 99.34 204.88 127.53 131.28 242.31 186.59 121.95 138.29 99.25 197.02 103.19 274.9 228.81 86.74 289.85 107.69 105.18 123.72 77.23 107.93 92.76 146.11 57.06 193.46 198.87 98.56 121.96 58.36 59.84 123.64 132.16 83.99 357.81 137.32 185.21 118.15 138.16
AAL22344 (gph)
 107.63 123.32 102.49 169.19 142.17 153.7 160.37 181.0 104.12 126.12 99.18 151.03 101.25 245.43 285.68 35.11 140.73 99.03 113.66 116.4 38.67 84.11 26.28 94.06 48.59 166.87 156.03 71.06 104.0 28.66 45.48 150.22 112.9 16.42 199.96 111.47 120.86 110.72 143.93
AAL22373 (yhgI)
 133.64 264.88 143.37 186.55 50.3 105.46 1980.2 275.03 160.94 205.23 218.53 91.18 144.71 289.7 369.0 71.06 730.92 464.2 724.35 509.38 75.59 312.03 172.42 266.89 72.8 283.82 165.06 272.55 117.39 81.06 169.82 84.96 144.1 75.48 1255.4 181.94 531.8 68.13 84.47
AAL22561 (grxC)
 1306.5 762.43 1030.08 1091.2 1237.41 707.3 714.58 911.79 1037.31 647.6 1341.21 977.67 1519.85 755.93 2347.14 375.48 1297.55 542.85 473.96 566.59 219.29 385.93 397.94 688.6 302.83 625.13 973.37 914.4 571.74 381.17 205.45 907.01 526.52 409.3 1382.0 971.92 740.05 1637.08 1265.39
AAL22562 (yibN)
 571.13 340.26 527.51 587.81 574.33 343.54 717.22 478.73 334.28 335.51 478.93 454.44 886.54 477.15 664.97 284.98 532.38 302.28 301.37 355.89 187.35 220.39 390.82 324.38 185.36 664.07 470.96 530.75 433.66 309.73 180.49 410.9 475.53 395.78 654.67 427.69 358.48 645.33 736.72
AAL22586 (rpmG)
 3750.36 2753.69 23.26 745.65 77.13 303.64 14758.03 287.7 56.8 362.38 42.48 753.75 62.73 31.3 0.0 346.83 3985.72 0.0 0.0 0.0 0.0 5432.46 638.94 413.44 28.85 303.64 72.21 387.17 1119.97 129.65 11.43 99.79 1633.02 319.29 4544.49 30.77 2291.51 30.67 146.58
AAL22748 (yifE)
 311.81 610.66 987.97 732.8 1259.0 197.48 818.89 478.02 762.11 558.55 825.06 567.94 313.65 319.19 1514.95 875.78 2594.4 235.36 139.23 245.98 492.4 704.76 380.25 616.36 502.8 744.52 2790.25 213.58 187.58 1731.42 213.48 677.86 184.53 236.38 4357.59 2703.02 768.2 2069.88 467.04
AAL22760 (ppiC)
 456.59 341.77 175.69 294.93 297.68 159.53 831.69 646.74 280.9 254.32 263.58 392.73 164.36 443.31 596.99 167.91 1159.97 178.48 233.12 240.96 123.85 213.75 386.87 927.88 169.65 264.3 853.44 238.72 271.81 699.63 53.66 309.81 201.19 182.66 1165.16 809.41 961.96 182.77 412.4
AAL22998 (hupA)
 5336.1 6275.63 3430.05 7158.77 2185.66 7341.01 6523.49 4889.74 4684.9 9085.85 4569.98 6623.01 646.57 3994.12 12948.5 4263.54 34406.22 1597.8 1939.03 2151.9 610.24 2819.88 6414.28 2003.86 1868.98 6938.99 9445.44 4744.39 5181.5 23041.1 1144.29 4669.06 4105.64 4051.76 26056.1 12701.3 1039.97 1064.1 2365.73
AAL23080 (ssb)
 773.02 445.91 411.39 722.57 399.59 388.29 581.2 477.72 475.07 400.15 584.28 699.13 419.51 444.22 1046.62 172.42 932.63 545.7 536.5 646.21 254.08 200.6 142.87 678.56 419.25 757.81 1011.99 307.3 1181.81 76.32 130.22 371.67 1339.48 165.29 934.65 952.44 743.64 357.87 457.92
AAL23110 (lpxO)
 29.71 91.34 50.82 23.21 19.79 62.87 345.82 67.47 26.73 26.79 39.89 6.15 26.73 87.2 26.59 92.24 199.78 80.69 78.76 82.49 68.45 173.43 14.26 58.42 62.56 95.03 12.42 25.72 12.73 19.58 47.06 13.5 12.03 34.9 244.18 18.88 161.2 23.74 15.21
AAL23157 (efp)
 690.16 465.91 141.08 809.11 572.64 295.53 863.06 502.18 546.81 506.64 592.39 1135.8 215.41 464.08 1515.26 167.31 2551.6 446.38 358.87 454.51 82.67 228.76 279.66 753.62 161.5 778.24 716.41 369.82 439.78 821.73 128.54 487.17 520.11 197.27 3124.03 871.95 688.99 293.12 591.13
AAL23234 (ppa)
 872.72 763.86 429.73 931.5 893.83 472.96 877.49 893.81 821.97 757.44 957.96 2014.16 532.45 980.91 1026.32 295.45 1473.1 261.7 362.69 336.06 165.29 291.72 315.85 1138.77 330.18 1462.78 1447.73 621.86 916.58 4105.22 236.61 827.67 972.61 176.52 1939.6 1970.02 801.9 666.97 1085.51
AAL23259 (cybC)
 204.85 442.66 670.12 360.21 513.81 54.96 403.56 274.36 191.22 405.24 184.84 73.6 564.65 285.65 198.25 106.75 1083.57 179.3 230.47 280.65 79.21 569.06 101.43 255.8 169.31 482.57 193.71 280.05 235.33 471.07 123.14 407.43 156.35 104.99 492.21 249.26 238.42 439.81 525.58

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)