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Heatmap: Cluster_43 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19063 (STM0099)
 49.59 739.17 9.17 21.16 10.87 67.1 190.59 83.12 16.87 91.49 47.77 15.59 12.03 32.06 17.51 29.45 212.6 32.84 43.44 44.07 15.99 1053.78 6.18 105.5 233.45 10.77 42.7 48.43 27.53 4.21 7.2 8.9 28.12 19.68 110.15 25.6 219.87 3.73 17.02
AAL19155 (fhuA)
 226.6 93.64 89.97 25.27 8.33 104.46 223.19 224.78 36.55 10.48 92.22 2.62 94.7 487.31 5.03 20.7 72.68 50.73 74.72 62.91 144.74 227.42 0.69 52.37 82.26 83.59 15.3 32.01 24.99 16.38 9.01 59.66 5.27 0.54 92.76 16.5 111.0 52.99 248.44
AAL19264 (STM0307)
 42.47 76.82 48.32 37.67 34.76 455.07 205.12 83.59 45.25 32.76 77.93 20.9 53.82 36.07 134.29 70.19 45.44 34.69 38.51 42.92 97.65 36.85 100.57 110.88 164.4 30.38 110.34 62.31 22.89 15.51 32.58 38.81 22.52 45.2 129.07 43.46 293.87 32.38 50.5
AAL19423 (rpmE2)
 16502.23 1469.94 70.69 706.45 26.33 10.26 29.96 118.52 19.93 40.61 37.71 17.63 55.4 52.24 107.33 23.16 134.97 22.88 21.33 22.54 3.65 42.46 62.59 49.58 13.67 32.72 7.28 47.16 537.76 33.4 19.76 55.07 880.83 29.14 333.73 16.85 85.5 61.54 39.23
AAL19424 (rpmJ2)
 132.69 124.28 7.01 1.83 6.44 3.5 35.25 2.82 0.97 1.65 1.22 0.0 6.45 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 22.45 38.26 0.0 6.37 12.19 0.0 3.61 0.0 2.36 0.0 0.0 0.0 3.13 58.65 2.41 10.58
AAL19425 (ylaC)
 557.26 261.67 459.87 84.87 59.28 35.5 294.44 133.39 52.79 91.13 87.33 57.48 542.26 318.64 43.21 226.53 136.09 127.04 134.25 210.53 57.11 355.05 187.06 131.07 245.03 62.64 40.64 91.67 21.91 24.04 189.93 213.8 34.03 270.83 154.9 228.46 122.86 132.28 132.91
AAL19436 (ybaN)
 58.82 79.91 36.67 18.89 16.02 24.48 53.66 57.71 20.19 17.51 31.44 13.28 44.72 104.18 8.26 28.66 14.17 21.27 15.41 22.18 83.61 171.19 7.45 77.17 60.12 38.77 37.26 27.94 28.19 5.47 19.76 62.14 19.39 5.76 19.37 48.67 82.34 17.23 86.54
AAL19536 (fepA)
 166.41 155.25 13.28 37.32 4.15 83.37 289.7 230.62 7.09 3.88 18.57 11.07 10.74 336.68 5.69 51.85 9.5 7.99 7.59 9.61 41.8 183.11 4.71 43.94 21.91 20.68 67.79 6.44 5.32 1.44 4.93 8.83 4.5 6.21 7.31 28.94 142.43 6.01 18.38
AAL19537 (fes)
 48.57 132.8 7.49 6.32 1.07 27.17 91.69 142.93 5.61 1.52 21.84 0.88 3.6 217.79 3.31 24.03 10.08 5.4 6.05 6.87 99.47 183.0 0.28 20.11 36.97 16.96 42.47 14.89 4.11 0.63 1.4 11.32 1.28 0.65 9.22 32.75 59.32 2.33 24.23
AAL19538 (ybdZ)
 235.06 348.24 12.98 65.27 1.55 308.91 200.95 250.13 6.51 1.58 21.65 4.42 4.53 426.2 2.17 79.62 5.19 1.03 2.31 2.88 126.76 577.51 0.59 36.33 79.72 35.23 94.77 12.39 14.03 1.94 2.18 2.9 2.82 0.21 6.9 61.82 136.34 4.88 3.42
AAL19539 (entF)
 49.73 92.24 8.29 9.89 2.25 236.19 54.82 106.86 5.34 2.23 11.27 2.27 4.71 175.34 1.52 26.65 4.62 2.74 3.37 3.82 62.88 134.1 0.78 23.93 24.19 9.98 34.71 7.13 8.13 0.9 1.86 2.86 2.51 1.03 3.22 24.4 68.05 3.88 2.59
AAL19545 (fepB)
 74.5 43.33 15.65 7.41 3.4 22.7 35.26 88.98 9.66 4.14 24.88 2.4 14.35 171.97 1.45 13.15 10.67 5.85 6.57 5.88 32.31 54.95 0.79 24.42 23.83 25.53 28.12 21.78 9.37 4.46 4.53 14.59 4.4 1.22 9.81 34.67 48.62 5.01 29.14
AAL19546 (entC)
 81.23 86.38 5.98 11.62 2.57 35.29 74.83 133.92 9.71 1.43 43.14 1.44 3.44 241.91 1.91 12.37 10.77 2.92 2.51 3.22 9.83 30.37 0.41 42.05 7.71 16.95 62.54 6.44 3.84 1.36 1.8 4.03 2.0 0.44 7.12 77.63 83.94 3.78 10.98
AAL19547 (entE)
 72.08 76.7 8.15 14.45 2.0 84.45 58.78 108.78 6.97 2.19 18.23 1.55 4.94 170.18 1.54 13.08 10.31 1.94 2.34 2.77 7.15 24.29 0.48 33.47 5.97 12.11 49.82 5.27 2.95 2.0 1.48 3.62 1.86 0.51 8.44 54.45 67.38 5.69 3.31
AAL19548 (entB)
 99.6 106.63 20.41 22.6 4.9 346.84 93.93 136.77 7.08 5.57 10.21 2.28 15.01 215.47 4.36 34.0 15.22 5.24 4.83 5.74 13.13 29.43 0.88 69.5 10.15 17.75 82.82 7.17 7.1 1.12 2.06 8.48 3.0 1.6 11.21 113.37 132.47 13.13 6.08
AAL19549 (entA)
 90.74 84.38 15.22 17.87 5.17 194.41 41.2 97.76 5.95 3.86 7.45 3.1 12.25 168.41 1.56 18.23 8.03 2.46 3.64 3.1 13.77 21.3 0.68 39.49 10.64 11.34 69.58 7.63 7.1 0.75 1.89 8.44 3.01 0.79 5.08 95.59 79.0 11.98 6.16
AAL19550 (ybdB)
 255.79 91.65 27.25 66.07 9.72 224.2 121.98 181.59 9.63 7.12 10.47 4.31 16.04 265.82 8.18 15.98 16.16 8.27 7.48 9.84 12.3 26.21 0.5 50.45 11.55 13.01 81.29 9.51 9.43 2.12 3.09 13.79 3.56 1.18 14.86 126.74 121.55 19.3 9.47
AAL19729 (ybhB)
 71.87 153.05 240.14 70.96 52.28 470.63 114.8 111.21 42.2 75.17 40.63 53.44 227.19 155.32 93.54 36.86 41.85 59.94 40.55 54.96 337.7 168.5 6.29 40.94 350.63 146.79 150.48 78.66 75.73 15.97 31.81 53.89 50.74 18.67 28.37 92.4 79.86 67.23 81.67
AAL19798 (yliJ)
 50.14 116.37 128.98 77.63 40.53 104.73 196.35 102.56 68.34 126.79 75.7 35.35 91.89 116.27 189.91 40.36 105.35 177.5 141.6 183.23 71.97 67.96 20.22 95.02 115.93 134.55 265.35 142.63 74.51 9.92 120.01 70.13 62.6 31.38 74.59 212.41 171.74 60.53 72.27
AAL19894 (lrp)
 622.5 609.07 453.82 599.51 222.79 564.59 779.93 987.15 316.5 608.68 394.5 322.34 288.68 1339.06 1613.45 328.39 1603.19 646.61 521.52 675.65 130.24 603.54 433.2 288.56 124.39 409.59 335.73 489.65 386.27 138.75 240.54 272.78 410.93 309.98 828.96 357.03 307.84 297.44 345.52
AAL19930 (ycbK)
 86.35 267.08 225.37 125.52 163.61 119.15 582.72 391.01 107.09 321.48 122.39 128.16 251.04 596.43 359.99 163.71 163.67 368.77 411.66 485.36 161.97 435.77 327.77 177.23 166.57 183.45 138.36 203.47 117.03 16.85 178.82 118.55 102.03 217.69 312.11 96.25 235.83 172.4 203.18
AAL20133 (fhuE)
 31.44 35.98 6.31 5.92 4.49 26.27 27.47 44.23 4.49 1.77 8.1 2.12 7.74 63.99 1.46 18.0 2.35 3.43 3.04 4.03 23.98 77.48 2.91 27.87 12.1 5.72 23.62 5.35 3.55 0.9 2.88 5.15 3.54 3.77 3.53 4.02 77.16 3.12 14.06
AAL20188 (STM1263)
 1974.91 501.64 35.09 338.42 40.0 7.35 20.02 60.74 15.74 16.93 24.35 17.45 34.36 27.62 38.54 14.03 218.18 25.46 26.14 27.12 8.0 30.49 15.02 67.25 12.63 57.46 10.88 20.35 692.39 18.64 4.07 26.14 895.61 17.26 269.82 14.45 113.31 36.1 31.78
AAL20268 (nlpC)
 75.51 110.35 62.58 48.25 59.5 30.97 87.15 77.4 41.7 75.7 50.0 20.37 115.02 91.88 116.85 30.43 42.41 102.1 59.83 107.79 71.61 193.39 37.9 69.29 75.05 168.71 24.82 47.83 63.39 29.66 29.56 26.78 61.86 19.11 32.86 21.87 93.11 86.41 68.11
AAL20283 (aroD)
 19.44 41.37 40.7 30.15 20.55 17.78 31.42 42.79 26.23 33.65 28.05 15.68 26.31 38.81 54.81 20.05 46.22 30.91 30.79 37.64 11.34 35.25 16.89 16.78 14.45 43.99 30.07 28.59 40.79 5.72 13.96 23.57 39.41 16.4 37.82 20.09 24.17 27.7 27.9
AAL20504 (STM1586)
 301.92 105.04 50.7 86.84 15.14 1381.21 166.57 224.44 26.12 16.34 52.11 16.73 46.99 462.45 8.55 97.81 36.04 36.12 35.54 44.59 70.38 60.6 16.59 73.98 44.99 83.56 139.47 72.35 48.13 17.67 24.3 41.57 21.72 20.95 30.68 138.09 225.14 34.12 90.78
AAL20521 (yncJ)
 26.87 81.47 6.53 12.48 5.48 162.62 54.58 174.88 7.35 12.92 18.07 3.17 5.62 28.63 56.02 40.12 69.86 121.92 55.59 145.72 630.83 172.96 61.51 88.07 512.59 15.83 10.81 70.37 19.13 10.93 170.34 3.87 10.76 18.81 94.24 5.75 127.13 1.72 5.78
AAL20526 (tehB)
 42.95 89.32 136.1 80.22 108.9 64.98 160.05 98.7 57.88 187.61 67.48 60.77 100.28 117.91 131.57 109.17 177.64 81.3 69.08 89.82 40.64 59.72 119.34 58.24 46.71 86.53 73.71 107.73 62.72 17.31 46.17 88.0 51.96 122.83 186.44 50.7 99.0 137.3 100.51
AAL20556 (STM1638)
 96.26 120.63 73.1 121.54 104.84 85.25 115.73 371.55 54.93 163.18 74.56 45.25 47.9 546.75 141.9 28.04 192.07 114.87 142.9 165.45 3.8 69.79 50.65 83.95 10.04 229.76 55.0 46.17 142.61 36.59 27.36 91.47 126.71 44.7 272.66 45.24 138.9 135.31 116.43
AAL20567 (STM1649)
 277.7 86.88 418.66 50.5 291.13 203.48 142.08 32.5 305.69 273.76 270.19 168.89 477.13 31.3 0.0 0.0 0.0 0.0 0.0 0.0 1374.11 4.34 0.0 228.4 489.06 4.09 344.01 431.61 5.48 104.92 322.44 243.96 11.52 0.9 0.0 458.97 247.48 314.12 373.03
AAL20655 (tonB)
 67.3 113.18 47.67 31.23 19.6 53.77 310.61 174.24 47.33 26.93 96.77 20.36 65.74 348.18 21.96 24.33 72.91 154.94 145.56 182.2 61.54 182.01 7.37 44.7 47.59 74.62 44.33 32.72 35.67 7.32 28.11 65.2 36.78 9.56 143.31 42.2 86.62 25.41 123.24
AAL20723 (STM1808)
 46.82 45.0 81.72 46.9 30.89 13.26 87.56 44.41 55.61 287.55 81.73 22.48 90.29 43.56 47.79 42.02 31.26 45.63 43.8 59.02 7.93 24.28 21.28 123.81 18.69 35.51 58.71 71.91 22.85 4.84 25.08 66.56 27.48 80.9 43.77 32.06 1817.98 50.08 65.91
AAL20806 (yebA)
 156.72 180.35 55.99 85.36 70.63 24.97 101.18 97.49 56.2 83.68 64.85 63.18 81.84 112.96 153.56 71.84 96.73 154.74 198.86 209.62 41.74 86.69 123.85 99.41 31.5 72.22 61.57 114.63 111.26 12.97 76.06 49.85 134.82 80.61 158.42 58.98 113.54 56.46 96.96
AAL20807 (znuA)
 430.24 423.99 51.06 143.01 68.74 26.13 67.55 173.99 53.29 78.97 73.42 43.51 110.04 188.96 119.63 50.59 113.66 91.41 96.51 117.72 18.5 104.38 79.3 84.82 19.69 81.96 47.57 88.5 186.07 10.3 46.67 85.23 298.85 60.3 164.03 54.12 106.75 69.8 101.89
AAL20808 (znuC)
 57.04 82.95 50.86 48.99 40.22 8.11 22.4 76.66 28.88 33.79 35.1 38.22 71.64 61.7 29.6 28.73 18.22 33.86 33.24 43.17 13.18 38.6 38.88 30.22 17.53 32.92 23.31 43.19 102.31 7.87 47.64 63.94 136.61 35.82 24.14 23.67 36.09 50.14 46.62
AAL20984 (udg)
 118.71 230.9 109.65 69.68 36.36 187.28 106.01 111.51 18.48 46.2 25.63 9.54 35.21 123.01 121.86 205.64 77.28 119.44 150.7 139.92 119.9 466.02 70.2 57.59 157.02 76.32 58.01 115.95 89.29 45.08 39.16 36.07 109.68 41.14 54.66 32.95 131.79 10.44 46.56
AAL21103 (cirA)
 192.97 55.96 7.16 16.21 3.31 101.9 21.63 209.13 8.61 3.04 29.0 2.52 6.35 365.11 1.27 39.01 5.31 4.25 4.62 5.07 23.17 15.82 2.01 35.94 13.58 18.28 60.03 5.29 4.67 1.46 3.48 4.43 4.26 2.6 4.68 21.19 88.03 4.9 13.05
AAL21450 (hmpA)
 10.6 28.32 25.23 32.61 19.37 34.18 17.66 27.51 22.44 489.13 20.38 9.07 19.93 48.55 16.35 4.13 7.85 7.99 9.1 10.16 3.62 26.82 5.7 23.87 5.92 39.16 13.95 28.2 11.74 3.59 6.3 34.07 10.93 2.31 7.12 15.6 103.68 30.97 27.34
AAL21740 (ygbA)
 18.7 30.31 22.81 21.27 6.2 3.13 46.82 23.91 10.32 94.99 19.32 10.42 20.24 9.48 8.37 5.16 12.24 24.56 23.42 27.78 12.43 41.21 6.78 35.72 15.65 7.02 7.54 34.66 14.39 2.83 19.47 11.6 14.06 5.59 10.09 5.45 278.68 10.33 13.19
AAL21843 (STM2963)
 171.31 210.11 263.86 172.5 176.71 68.2 178.2 317.95 148.97 164.48 119.66 138.65 125.3 433.61 375.08 64.96 370.03 135.17 107.74 140.72 77.7 156.29 53.02 94.82 131.32 254.36 126.8 167.31 132.12 32.92 63.28 221.17 118.26 44.68 498.76 208.82 72.26 191.76 213.68
AAL22032 (exbD)
 452.9 248.11 84.34 128.64 79.99 83.96 517.33 392.59 67.96 25.07 140.08 13.05 224.12 647.53 56.84 173.96 280.5 221.93 222.89 228.61 194.13 225.22 51.45 188.01 156.7 153.96 179.51 145.46 155.16 87.63 57.66 230.27 63.16 50.76 434.21 148.2 410.27 65.62 500.72
AAL22033 (exbB)
 428.42 186.54 139.55 169.79 97.15 91.09 723.5 558.86 62.29 44.81 141.77 18.14 313.84 931.79 65.18 232.54 207.54 256.66 269.61 323.41 226.06 186.4 76.46 151.62 221.29 205.7 159.61 210.03 213.25 37.18 95.59 413.76 87.24 63.33 280.2 148.91 342.69 158.04 492.58
AAL22307 (bfd)
 1950.67 4884.17 544.46 189.0 50.58 420.09 4138.06 590.71 197.52 29.72 819.2 29.5 519.06 1123.36 14.28 1021.42 302.04 698.33 541.46 885.37 4508.2 9255.01 73.44 425.38 1294.18 304.46 386.79 433.51 87.31 1468.49 142.85 898.53 58.5 69.29 518.52 444.45 2047.39 127.6 1240.6
AAL22364 (ompR)
 77.48 188.29 201.43 161.79 131.7 121.22 251.11 168.97 162.64 244.37 180.41 142.95 188.15 118.49 132.04 99.49 190.21 190.81 183.66 223.17 98.8 161.43 66.08 172.19 115.95 211.81 309.59 191.17 104.25 34.4 84.96 157.16 95.44 62.16 166.95 352.35 279.96 140.71 219.53
AAL22367 (feoA)
 962.41 454.57 290.03 306.59 149.73 503.83 853.25 488.88 77.49 163.14 137.59 64.54 408.91 427.59 48.02 831.28 145.89 239.25 230.88 288.53 1679.64 359.74 166.48 180.34 2585.76 173.57 296.1 387.44 788.73 22.45 154.82 615.73 337.39 157.74 243.56 145.99 693.33 190.04 552.94
AAL22368 (feoB)
 106.25 147.63 123.99 86.43 105.18 309.43 98.56 233.33 48.6 60.08 54.62 19.89 176.17 246.86 17.0 184.09 29.36 73.75 84.24 80.82 255.93 226.21 28.38 56.31 237.22 93.69 122.23 118.49 232.11 12.55 88.17 281.75 100.53 24.48 47.84 61.13 230.24 99.26 318.86
AAL22689 (dgoR)
 14.56 35.84 36.19 39.74 28.0 29.57 26.78 45.92 21.02 34.17 28.27 11.42 21.97 41.93 95.54 23.72 55.67 27.91 33.12 37.78 7.54 15.45 15.4 17.21 18.84 26.0 18.98 31.89 17.62 4.14 30.04 38.83 13.83 18.47 66.37 32.61 15.11 43.23 31.54
AAL23219 (ytfE)
 62.62 30.7 20.12 20.0 17.52 2.34 11.86 21.95 21.71 293.13 25.84 9.21 27.72 21.46 18.25 7.78 16.09 9.32 10.16 12.17 5.38 33.69 5.62 37.54 7.68 11.39 14.22 18.18 11.55 2.79 11.09 24.34 13.44 6.35 52.57 12.03 79.79 19.35 23.18
AAL23273 (treC)
 4.89 16.2 6.01 6.75 8.75 3.52 4.35 7.17 7.37 9.63 9.92 6.76 7.83 5.57 12.87 19.5 4.41 4.31 5.71 5.61 2.91 10.35 371.68 90.87 4.05 6.47 72.43 10.75 6.8 0.8 12.86 8.69 4.37 65.18 7.3 158.66 86.72 9.04 13.03
AAL23368 (fhuF)
 157.54 144.63 41.01 13.42 8.98 58.86 196.17 183.08 17.56 8.88 61.3 2.93 35.31 449.67 4.33 33.16 26.94 31.98 29.18 36.0 128.05 259.59 2.63 44.72 75.62 63.06 43.68 42.98 18.14 6.67 11.12 68.31 9.97 3.55 76.46 52.62 109.96 14.03 86.67

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)