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Heatmap: Cluster_45 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19056 (surA)
 176.29 206.36 227.06 191.14 147.25 105.07 206.43 274.39 142.32 160.52 113.41 303.1 256.59 412.29 307.92 112.18 269.69 170.77 226.33 221.3 129.05 347.49 139.14 160.99 86.35 294.75 211.6 222.56 235.28 51.28 126.03 151.16 198.11 84.59 337.91 163.13 175.18 219.78 177.02
AAL19145 (panC)
 51.34 64.5 27.84 59.02 36.75 39.14 28.35 54.82 56.49 55.75 50.4 149.57 28.87 87.71 50.79 14.63 14.77 19.74 24.77 24.47 5.99 45.83 17.82 63.15 15.11 131.19 142.47 52.71 47.95 23.62 17.73 41.8 57.81 12.07 73.18 120.96 74.56 55.73 57.74
AAL19146 (panB)
 43.86 58.47 20.28 36.47 27.44 35.37 17.1 52.67 46.05 48.86 35.22 175.32 20.72 77.46 35.71 6.81 6.61 13.39 17.45 19.91 3.31 29.7 7.27 60.91 9.26 82.61 173.9 39.72 24.87 9.25 14.64 35.85 31.31 4.46 21.72 168.96 66.02 30.92 47.72
AAL19166 (hemL)
 60.21 112.95 65.67 89.84 76.02 54.15 51.43 115.01 146.26 93.82 110.1 171.67 58.31 174.87 75.83 11.87 48.85 48.03 50.89 55.03 30.46 44.99 10.37 226.38 39.54 133.57 107.42 79.13 146.85 32.3 55.92 81.62 153.6 9.02 57.53 130.85 139.83 61.33 99.0
AAL19171 (pfs)
 75.04 116.19 56.24 94.18 117.2 105.24 48.62 111.69 120.25 129.83 119.31 223.32 59.25 156.1 63.54 16.01 68.73 35.48 39.04 41.4 22.83 70.47 13.54 130.28 25.31 161.66 113.1 96.04 92.4 26.46 55.37 87.12 106.08 10.17 53.47 175.51 91.04 79.79 103.54
AAL19182 (pyrH)
 331.24 198.53 91.78 399.47 261.31 179.18 488.41 223.07 278.68 296.53 351.22 510.81 125.93 289.26 319.14 83.16 101.7 272.76 308.85 310.02 49.34 92.96 143.89 241.87 43.42 312.05 354.43 171.74 196.59 95.47 55.54 313.83 228.61 62.54 113.31 254.11 231.65 236.13 325.9
AAL19183 (frr)
 539.56 499.27 265.86 587.14 348.55 314.06 774.5 428.22 489.36 492.48 564.56 688.41 421.8 480.7 443.2 245.87 362.44 236.13 275.64 292.16 198.23 369.41 292.88 503.31 219.01 516.76 655.87 477.78 392.92 354.4 235.27 458.49 415.13 255.76 428.29 596.39 444.86 279.41 583.7
AAL19187 (yaeL)
 164.45 197.67 134.37 149.14 179.02 54.7 178.86 259.53 220.37 136.49 246.98 191.25 159.79 332.86 261.88 140.9 137.88 205.41 196.47 215.35 150.68 554.94 319.14 167.55 104.33 171.67 201.37 228.2 202.04 59.84 110.52 191.6 210.88 150.63 149.69 168.45 199.16 181.48 237.55
AAL19188 (yaeT)
 231.11 291.26 403.9 247.86 440.31 173.72 216.89 396.28 304.7 259.31 214.45 320.63 329.46 527.62 308.43 195.36 160.69 154.01 176.78 180.89 187.06 594.49 437.78 215.68 131.39 346.88 367.72 323.72 292.38 75.18 158.51 435.57 289.32 164.6 172.18 232.57 274.93 456.11 430.09
AAL19196 (accA)
 120.22 146.47 47.94 160.1 113.16 115.47 93.92 193.3 184.57 239.04 234.21 200.79 73.86 384.67 70.13 46.22 119.93 76.23 78.5 87.1 63.32 110.96 41.37 153.16 82.85 323.33 220.26 117.13 189.77 39.57 46.21 74.53 181.94 24.64 152.68 209.05 142.59 89.1 114.13
AAL19277 (proB)
 58.46 95.61 42.64 102.07 45.63 44.96 131.64 132.1 99.52 69.63 102.96 195.16 47.84 224.2 227.0 34.37 93.62 88.73 99.78 99.92 34.45 58.02 39.43 106.53 59.91 168.47 113.83 106.16 128.4 19.68 45.43 43.92 118.6 28.18 120.71 111.64 134.69 44.93 75.1
AAL19278 (proA)
 47.72 99.13 67.42 99.62 54.62 81.37 76.13 105.13 96.61 69.9 92.59 180.99 44.25 188.7 111.05 28.56 61.18 47.28 60.44 52.78 39.52 77.59 31.94 84.43 55.93 166.78 120.22 81.71 145.95 19.65 35.65 38.45 128.72 18.69 66.17 94.31 116.37 69.18 45.36
AAL19362 (secF)
 183.78 135.31 89.44 142.92 152.97 87.02 126.6 194.69 91.7 105.89 45.73 304.34 105.0 281.34 121.77 195.48 114.07 119.02 134.83 131.26 50.11 117.38 181.86 194.06 54.35 162.75 195.42 131.09 139.92 45.77 74.56 115.54 158.77 145.59 106.36 154.97 163.33 183.24 149.19
AAL19400 (yajG)
 69.58 121.38 57.8 58.48 79.74 71.45 48.08 96.66 147.7 108.98 171.49 272.84 94.48 159.97 79.15 23.97 115.51 26.56 35.36 36.21 16.37 100.03 39.01 123.06 22.39 261.52 319.84 88.37 54.51 35.08 38.78 94.98 59.06 21.16 121.08 242.59 162.47 57.86 154.92
AAL19404 (clpX)
 382.39 506.33 425.97 546.23 295.25 305.56 325.07 577.84 443.37 443.67 448.31 615.95 512.39 781.39 488.28 396.95 259.11 306.26 316.41 323.88 455.54 756.06 292.84 347.3 412.58 574.34 440.12 888.42 807.68 265.92 306.22 379.38 694.24 338.94 342.43 390.78 297.01 294.03 480.5
AAL19694 (ybgF)
 185.37 312.65 163.14 203.96 370.74 236.4 214.11 404.94 191.25 249.68 149.2 299.32 191.01 733.13 71.2 202.34 151.4 104.52 142.06 137.32 105.57 576.37 373.27 95.83 98.0 435.46 270.8 156.43 138.08 110.04 97.42 288.92 139.59 151.39 232.33 172.65 124.97 277.42 336.52
AAL19724 (ybhC)
 61.91 102.28 59.95 122.6 119.53 72.4 49.48 134.83 176.58 160.44 141.55 208.32 57.49 226.69 78.84 9.55 80.07 36.23 40.26 42.25 10.42 83.2 13.65 150.34 16.46 360.26 301.09 69.42 46.15 38.41 21.78 108.82 40.86 6.77 80.46 299.88 123.25 145.66 116.1
AAL19932 (aspC)
 164.98 320.53 129.03 393.58 205.81 638.13 222.15 477.3 180.97 341.75 154.85 323.0 120.68 939.88 323.02 95.36 205.18 262.17 299.21 306.38 90.98 255.19 85.27 144.69 188.66 475.98 242.94 206.76 408.98 50.49 116.82 163.28 370.07 72.1 196.81 220.21 156.57 134.45 219.0
AAL19934 (asnS)
 150.79 237.45 173.32 229.39 198.34 103.35 288.17 398.71 318.46 383.15 269.24 357.38 176.41 564.35 266.77 117.77 261.83 299.31 357.73 330.08 109.7 214.53 109.48 269.61 162.69 397.2 216.93 305.81 259.65 72.1 127.17 124.89 220.85 105.31 206.26 188.36 249.42 423.55 175.03
AAL20124 (fabG)
 754.86 616.49 434.46 927.34 881.05 676.74 501.3 583.63 541.95 607.29 494.08 696.91 535.64 708.3 529.02 350.86 345.29 259.87 254.0 292.4 417.5 265.67 386.38 570.75 325.42 626.48 875.44 450.68 456.32 301.43 210.84 721.78 511.02 305.01 349.83 934.31 377.8 630.96 852.01
AAL20135 (ycfL)
 106.89 201.1 201.51 168.0 134.07 316.57 84.85 255.96 110.36 216.19 111.35 133.69 263.33 383.6 69.7 55.51 40.53 83.77 91.91 99.42 153.32 250.68 16.79 127.34 189.79 218.87 160.5 136.03 199.59 32.08 125.73 140.07 190.68 30.25 40.05 130.1 136.19 185.33 177.23
AAL20136 (ycfM)
 81.69 106.95 182.09 133.6 120.99 210.74 135.06 148.38 73.84 128.39 55.22 77.61 242.38 190.54 120.6 90.59 58.36 147.32 157.82 163.37 81.77 87.43 37.85 78.18 162.58 121.04 107.11 136.93 126.57 20.34 67.55 119.13 126.4 75.69 69.03 78.41 90.36 151.52 174.97
AAL20372 (pdxY)
 63.22 95.45 43.03 64.31 50.98 53.15 113.59 147.6 77.3 59.67 84.69 204.09 53.12 259.99 79.82 30.67 42.63 58.11 67.08 68.24 36.54 75.79 43.63 102.21 34.32 82.29 156.07 72.83 75.91 15.61 51.44 66.75 89.66 20.35 56.83 100.12 115.99 39.33 97.89
AAL20386 (ydgA)
 72.84 111.65 300.78 123.14 132.38 119.02 119.14 119.39 88.31 105.49 59.11 102.96 254.04 137.69 112.77 115.31 50.29 134.03 157.69 144.89 95.52 88.58 41.66 123.79 121.9 248.88 105.08 185.51 114.97 25.88 111.04 105.03 98.82 113.76 42.34 107.27 117.16 159.2 123.11
AAL20398 (pntA)
 142.17 167.64 123.07 221.84 96.98 258.82 61.7 335.13 156.19 261.35 138.56 213.82 116.76 338.75 306.39 65.19 62.76 129.86 124.97 150.54 39.84 133.09 60.86 165.05 92.97 214.32 146.43 206.25 298.18 23.12 78.27 122.64 284.68 69.01 42.04 151.98 151.29 132.29 158.8
AAL20399 (pntB)
 100.58 142.35 136.81 180.95 82.05 180.34 41.3 303.64 118.53 165.47 80.92 195.9 118.43 328.91 154.42 58.43 71.31 78.68 79.26 94.69 52.59 114.06 43.53 149.56 61.74 168.86 120.04 171.15 283.61 27.1 78.49 105.6 258.41 48.46 41.65 117.83 129.93 121.36 107.14
AAL20540 (ydcG)
 48.57 68.2 49.31 41.99 39.78 37.15 36.48 71.13 49.83 64.56 46.59 66.23 65.02 112.16 66.21 19.42 45.72 51.37 47.28 53.88 18.57 65.12 17.87 60.25 26.71 130.71 183.71 54.77 28.95 11.18 19.99 33.06 27.6 20.71 48.13 110.75 109.15 62.64 49.08
AAL20695 (prsA)
 373.74 356.01 214.72 690.3 708.92 830.73 455.62 1034.94 342.77 717.94 237.09 730.61 313.9 1709.46 217.2 165.84 147.84 375.81 395.61 429.15 95.57 292.07 265.81 244.92 67.32 899.13 486.98 304.79 484.22 85.55 239.46 459.8 647.98 128.16 192.82 320.34 225.7 575.16 690.66
AAL21072 (pbpG)
 53.8 70.44 48.27 39.72 42.38 29.76 71.5 91.06 45.7 44.7 59.75 156.43 78.28 165.44 53.18 29.73 53.96 33.32 39.94 42.62 44.51 53.48 33.09 75.76 48.89 96.76 88.66 43.82 59.9 12.58 26.76 47.38 57.89 26.85 72.35 61.35 82.31 34.75 88.86
AAL21293 (vacJ)
 106.59 159.69 152.17 154.46 146.5 112.88 89.39 174.77 167.87 212.02 203.06 204.32 205.16 260.66 188.91 84.71 120.69 111.13 92.12 115.91 80.88 118.08 95.8 130.96 127.25 300.47 200.29 142.56 118.36 51.14 98.41 118.86 115.11 101.12 154.12 234.53 160.69 154.66 176.77
AAL21414 (yfgL)
 141.01 126.7 81.67 123.99 77.17 119.5 119.3 147.25 78.5 145.81 73.35 141.08 87.29 196.88 234.53 91.69 47.51 124.97 143.38 147.43 61.47 157.23 112.74 89.62 64.81 135.71 108.41 102.48 105.04 44.75 62.86 70.88 116.24 52.45 43.65 83.44 103.26 119.98 85.22
AAL21415 (yfgM)
 142.37 175.41 130.65 159.4 89.6 131.72 126.76 218.51 110.15 177.62 98.68 218.08 110.12 351.21 169.6 91.7 41.97 120.92 133.66 128.91 137.29 305.42 87.68 133.46 129.13 228.82 204.58 132.34 209.92 42.21 95.16 80.46 208.46 39.63 38.14 165.44 149.49 141.81 113.89
AAL21455 (glnB)
 146.05 214.74 248.64 191.86 199.27 117.3 205.47 228.27 124.69 216.82 131.69 164.72 274.58 310.36 186.09 132.28 72.64 128.39 89.35 130.13 102.58 186.99 150.44 174.99 92.6 204.0 238.25 230.07 309.84 295.07 165.09 219.96 285.01 147.19 76.05 225.4 201.37 169.52 300.4
AAL21553 (yfiO)
 319.29 190.14 96.64 162.79 132.29 130.88 139.0 277.34 112.72 206.0 154.84 268.56 165.16 446.27 240.42 127.38 164.79 79.13 93.84 97.68 117.1 447.17 230.7 174.32 120.66 328.73 267.26 256.6 214.36 122.1 109.12 186.82 257.91 109.73 203.95 238.87 178.15 71.52 263.21
AAL21710 (ygaD)
 82.28 100.2 79.04 56.68 51.5 38.23 60.31 91.65 59.3 84.21 55.51 69.14 139.91 115.28 81.88 13.42 63.23 61.77 66.68 68.03 34.76 107.8 13.62 87.36 55.6 88.88 138.83 122.77 71.64 8.12 30.37 77.79 76.8 6.87 80.04 149.44 107.27 61.04 134.98
AAL21953 (speB)
 144.8 156.01 82.29 178.18 287.24 161.08 87.41 156.26 280.38 88.89 264.4 165.26 140.96 190.07 126.09 26.42 156.86 44.79 50.76 47.98 40.15 86.85 17.87 302.5 48.95 528.66 415.48 151.44 116.52 80.1 65.49 229.22 96.32 17.11 231.23 334.72 344.99 308.22 232.2
AAL21961 (speA)
 204.81 123.1 129.3 182.0 134.69 298.04 76.98 224.51 140.06 71.35 160.9 151.88 110.01 500.66 76.45 62.17 60.92 66.25 84.24 75.11 77.05 95.15 31.89 190.04 74.81 405.81 714.33 143.84 192.5 32.74 53.77 88.05 165.84 39.67 454.06 257.75 271.13 202.38 116.78
AAL22164 (mrsA)
 58.6 101.34 50.32 102.82 87.84 57.62 51.8 98.21 144.96 111.27 132.54 139.8 51.2 132.06 168.6 17.07 100.72 54.95 55.73 58.49 27.04 57.1 24.13 86.26 39.43 120.53 104.96 79.88 92.57 16.16 32.48 77.46 102.49 14.33 117.98 96.08 105.31 83.1 117.97
AAL22248 (accB)
 622.98 417.58 203.84 706.69 376.4 421.09 1060.61 508.66 398.71 491.75 535.37 804.6 300.36 806.88 450.75 110.11 557.86 375.61 387.85 378.43 79.06 278.46 148.33 663.4 88.23 1172.65 867.01 528.66 406.22 147.42 177.65 359.89 332.42 81.48 1192.23 665.28 524.73 291.58 568.57
AAL22249 (accC)
 392.67 266.29 91.64 359.78 216.34 297.17 217.97 516.43 330.55 319.53 344.17 458.77 118.05 897.51 111.91 77.89 188.82 83.75 110.78 92.94 49.25 205.16 105.78 429.06 53.39 824.98 573.87 256.2 226.86 174.05 136.69 179.34 208.18 47.49 329.21 453.48 305.53 208.69 265.0
AAL22359 (yrfH)
 93.99 71.99 38.75 59.27 25.53 53.2 86.83 76.74 35.64 42.71 54.83 47.36 67.37 98.47 94.48 20.02 96.47 67.7 136.82 74.77 42.63 143.18 13.36 62.41 30.85 71.44 77.38 90.49 46.69 16.26 16.22 43.16 55.29 11.71 247.47 68.0 59.28 37.16 54.39
AAL22360 (yrfI)
 103.12 68.02 30.47 94.86 27.0 119.6 121.97 85.07 33.92 61.86 46.19 64.34 34.15 98.77 252.54 43.49 85.13 146.74 204.01 130.79 67.54 68.76 40.49 111.75 33.81 73.37 80.87 77.18 54.87 15.93 17.87 36.13 70.74 27.47 214.35 76.07 151.76 37.98 38.46
AAL22384 (glpR)
 84.98 101.0 67.75 93.67 45.06 73.19 190.65 95.33 62.19 56.94 60.96 101.76 59.89 125.6 196.64 30.46 80.56 81.98 114.59 86.22 38.67 65.82 20.53 90.68 42.94 120.29 77.22 84.31 74.62 15.09 39.75 43.66 64.79 17.55 152.53 69.51 124.89 70.74 53.49
AAL22590 (dut)
 165.46 173.68 149.8 150.93 189.64 68.85 131.47 153.62 171.95 193.7 176.5 332.02 173.1 191.82 180.17 42.72 67.78 104.91 99.26 106.28 40.44 75.42 60.12 216.51 44.94 215.14 227.94 243.87 155.84 42.29 68.84 204.05 195.57 37.51 69.02 255.21 235.46 205.62 313.3
AAL22729 (atpB)
 473.02 535.31 289.74 447.35 613.22 406.0 269.92 473.1 450.17 463.24 449.56 643.17 363.98 626.9 507.29 198.87 365.49 293.03 193.52 279.64 163.18 505.39 228.11 399.21 118.26 736.5 644.98 483.43 481.3 187.1 150.06 590.95 526.78 212.43 429.37 477.97 381.46 589.02 663.42
AAL22818 (tatB)
 302.56 296.35 193.66 230.73 201.31 133.27 253.16 310.43 182.14 227.46 263.72 422.94 309.2 336.87 451.88 157.06 176.15 149.18 155.87 200.0 161.76 377.11 201.98 222.68 115.76 238.67 272.08 309.48 353.55 173.55 117.22 221.78 346.43 125.18 277.43 316.12 202.57 136.53 394.78
AAL22819 (tatC)
 232.25 135.76 55.55 83.04 89.02 66.97 110.35 166.11 62.65 85.34 94.3 244.27 93.29 231.7 142.38 114.18 130.54 48.78 43.37 56.91 99.79 142.15 171.61 123.93 65.69 109.7 144.44 142.16 115.1 46.33 62.04 93.07 128.38 109.17 248.98 131.04 130.41 55.67 170.22
AAL22974 (tufB)
 2747.87 3143.16 3023.93 4170.16 6147.23 3416.18 2300.21 3419.38 7591.2 4011.0 8831.61 6958.62 2026.58 4834.03 3998.63 1052.04 2783.07 1473.21 1288.33 1514.26 428.52 2019.71 1628.17 3284.81 432.94 5216.84 5838.71 2075.85 3479.93 1506.84 459.86 5726.82 2775.86 587.83 4358.35 5720.03 2609.56 5182.85 4046.52
AAL23182 (hflX)
 284.92 246.76 265.12 220.48 187.39 113.62 203.32 268.96 156.06 197.55 208.3 201.71 325.86 344.05 314.27 137.63 173.58 196.33 224.75 236.43 117.29 119.12 180.56 187.79 115.64 241.27 217.34 367.44 282.35 79.38 126.0 252.92 259.31 125.34 321.38 178.42 185.91 179.05 363.08
AAL23183 (hflK)
 325.03 237.95 264.65 326.0 182.71 417.29 230.12 354.97 182.27 266.89 187.54 289.22 270.66 464.33 417.08 145.32 350.98 227.17 268.41 248.9 334.98 356.62 99.98 190.19 214.13 478.11 259.2 358.24 296.39 77.69 103.35 224.27 249.95 68.49 773.52 184.08 195.14 196.92 318.72
AAL23184 (hflC)
 328.01 344.19 379.01 401.39 233.83 692.24 137.51 389.62 318.98 305.92 355.69 321.3 332.54 529.21 288.86 226.18 272.32 126.7 147.36 149.83 413.01 616.73 189.58 220.26 235.97 642.8 316.7 399.53 499.77 154.85 145.47 255.48 404.42 137.53 495.48 245.81 208.91 315.49 345.63
AAL23257 (yjgA)
 192.33 88.7 64.68 144.43 51.52 104.57 281.57 92.55 62.89 65.12 84.8 90.91 91.93 76.57 376.4 84.64 86.14 170.88 208.07 222.15 61.78 29.46 44.01 153.59 49.91 81.35 119.19 62.55 49.97 30.77 42.15 41.57 57.79 70.59 75.52 140.88 160.8 59.94 64.56
AAL23295 (holC)
 67.31 120.99 105.56 91.53 47.2 64.52 97.51 118.53 103.36 124.12 107.7 116.64 104.29 179.14 154.05 13.86 58.12 89.57 73.46 97.42 45.51 168.58 10.31 91.46 55.22 145.21 85.12 102.87 74.41 56.46 32.79 67.56 67.55 8.44 71.69 85.59 67.92 95.97 65.84
AAL23296 (pepA)
 79.36 135.05 196.09 157.0 82.76 189.19 67.95 126.49 191.28 213.46 177.35 166.3 202.38 194.24 113.78 23.0 61.63 56.96 65.39 71.56 70.41 157.86 13.66 135.68 93.72 261.22 154.98 139.46 120.16 40.07 34.82 95.92 109.81 17.3 53.91 180.67 117.94 172.29 122.4
AAL23396 (yjjK)
 181.57 187.91 124.01 265.94 154.19 361.79 130.97 225.97 197.28 246.45 182.52 376.18 176.12 398.81 177.73 40.18 133.55 89.35 95.18 99.95 76.59 193.05 35.86 178.53 87.09 433.23 267.64 141.3 197.74 52.53 50.33 129.09 168.61 20.82 143.71 233.07 167.8 238.74 215.99

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)