Heatmap: Cluster_33 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	55488,Cefotaxime	AH1263,WT,TSB	ATCC25923,DMSO	ATCC29213,Biofilm	ATCC6538,1/4MIC BITC	HG001,WT,L-exponential	IPLA1,NaPi	IPLA1,NaPi + LysH5	IPLA1,phage phiIPLA-RODI	MRSA BD02-25,WT	NCTC8325,RSH	NCTC8325,RSH,Mup	NCTC8325,WT	NCTC8325,WT,E-Log	NCTC8325,WT,Mup	Newman,Exponential	Newman,TSB	Newman,TSB + 1 mM MnCl2	Newman,WT	Newman,WT,Angeli's salt,Exponential	Newman,WT,Calprotectin,Exponential	Newman,WT,Exponential	Newman,WT,Na2S,Exponential	NRS384,WT	NRS384-rpoB-H481N-SCV	RN4220,WT,E-Log	RPMI + 10%LB,Exponential	TSB,Exponential	TSB,L-exponential	TSB,Stationary	UAMS1,WT	USA100,WT,CA-MHB	USA100,WT,CA-MHB,0.5ug/mL Naf	USA100,WT,CA-MHB,0ug/mL Naf	USA100,WT,CA-MHB,15ug/mL Naf	USA100,WT,CA-MHB,20ug/mL Naf	USA100,WT,RPMI + 10%LB	USA100,WT,RPMI + 10%LB,0.25ug/mL Naf	USA100,WT,RPMI + 10%LB,0.5ug/mL Naf	USA100,WT,RPMI + 10%LB,0ug/mL Naf	USA300 LAC,CA-MHB	USA300 LAC,CA-MHB,0.38 ug/mL Naf	USA300 LAC,RPMI + 10%LB	USA300 MRSA,dpurR	USA300 MRSA,WT	USA300 P23,Exponential	USA300 P23,Floxuridine,Exponential	USA300 P23,streptozotocin,Exponential	USA300 P23,WT,Exponential	USA300,0.0625ug/mL Naf	USA300,0.063 ug/mL Naf	USA300,0.1ug/mL Naf	USA300,0.5ug/mL Naf	USA300,0ug/mL Naf	USA300,1.0 ug/mLNaf	USA300,1.0ug/mL Naf	USA300,15ug/mL Naf	USA300,CA-MHB	USA300,CA-MHB,0.45ug/mL Van	USA300,CA-MHB,0.65ug/mL Van	USA300,CA-MHB,0.7ug/mL Van	USA300,CA-MHB,0.8ug/mL Van	USA300,CA-MHB,0ug/mL Van	USA300,delta agr::tet,DMSO	USA300,delta-mgrA::tet	USA300,DMSO	USA300,Exponential	USA300,RPMI + 10%LB	USA300,RPMI + 10%LB,0.031 ug/mL Naf	USA300,RPMI + 10%LB,0.063 ug/mL Naf	USA300,RPMI + 10%LB,0.1ug/mL Naf	USA300,RPMI + 10%LB,0.375ug/mL Van	USA300,RPMI + 10%LB,0.45ug/mL Van	USA300,RPMI + 10%LB,0.6ug/mL Van	USA300,RPMI + 10%LB,0.8ug/mL Van	USA300,RPMI + 10%LB,0ug/mL Naf	USA300,RPMI + 10%LB,0ug/mL Van	USA300,RPMI + 10%LB,15ug/mL Naf	USA300,Stationary	USA300,WT	USA300,WT,10 uM Linoleic Acid	USA300,WT,Apicidin	USA300,WT,DMSO	USA300,WT,Log	USA300,WT,RPMI + 10%LB	WT,Exponential	WT,L-exponential	WT,Mid-Log	WT,TSB,Exponential	WT,TSB,L-exponential	WT,TSB,Stationary	XN108,ccpA gene knock out
CPC51307 (cydC)	0.87	-0.09	1.65	0.85	-0.65	0.3	0.44	0.46	-0.02	-1.54	-0.8	-0.62	-1.16	0.39	-1.23	0.64	0.39	0.33	0.86	2.73	0.81	0.42	1.48	0.42	0.16	0.35	0.04	-1.05	-0.53	0.16	-1.53	-1.02	-1.33	-1.35	-1.24	-1.2	-0.14	-0.3	0.01	-0.7	-0.96	-0.59	-0.66	0.3	0.21	-0.4	1.2	0.36	-0.26	-1.16	-1.55	-0.06	-0.91	-1.0	-0.68	-0.71	-0.68	-0.74	-0.98	-1.41	-1.41	-1.27	-1.43	-0.68	0.1	0.53	0.87	0.04	-0.38	-0.2	-0.25	-0.21	-0.22	-0.4	-0.18	-0.27	-0.38	0.07	-0.2	0.42	0.04	-1.31	-0.74	0.07	0.05	-0.21	0.19	-0.9	-0.32	-0.44	0.11	-0.03
CPC51349 (cydD)	0.69	0.67	1.34	0.49	-0.95	0.66	-0.02	0.0	1.09	-0.91	-0.77	-0.88	-1.26	0.17	-1.13	0.92	0.56	0.59	0.94	2.63	1.02	0.69	1.6	0.14	-0.12	0.0	-0.12	-0.98	-0.57	0.0	-2.14	-1.15	-1.56	-1.58	-1.53	-1.44	-0.29	-0.55	-0.24	-0.92	-0.85	-0.41	-0.79	0.61	0.87	-0.06	0.99	0.34	0.21	-1.14	-1.46	-0.17	-1.07	-1.21	-0.65	-0.94	-0.86	-0.22	-1.04	-1.69	-1.6	-1.47	-1.6	-0.46	0.23	1.03	0.68	-0.12	-0.4	-0.37	-0.14	-0.44	-0.52	-0.52	-0.36	-0.11	-0.64	0.01	0.03	0.02	-0.38	-0.75	-0.15	0.25	-0.03	-0.48	-0.24	-0.03	-0.55	-0.45	-0.1	-0.17

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.