Heatmap: Cluster_33 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
55488,Cefotaxime
AH1263,WT,TSB
ATCC25923,DMSO
ATCC29213,Biofilm
ATCC6538,1/4MIC BITC
HG001,WT,L-exponential
IPLA1,NaPi
IPLA1,NaPi + LysH5
IPLA1,phage phiIPLA-RODI
MRSA BD02-25,WT
NCTC8325,RSH
NCTC8325,RSH,Mup
NCTC8325,WT
NCTC8325,WT,E-Log
NCTC8325,WT,Mup
Newman,Exponential
Newman,TSB
Newman,TSB + 1 mM MnCl2
Newman,WT
Newman,WT,Angeli's salt,Exponential
Newman,WT,Calprotectin,Exponential
Newman,WT,Exponential
Newman,WT,Na2S,Exponential
NRS384,WT
NRS384-rpoB-H481N-SCV
RN4220,WT,E-Log
RPMI + 10%LB,Exponential
TSB,Exponential
TSB,L-exponential
TSB,Stationary
UAMS1,WT
USA100,WT,CA-MHB
USA100,WT,CA-MHB,0.5ug/mL Naf
USA100,WT,CA-MHB,0ug/mL Naf
USA100,WT,CA-MHB,15ug/mL Naf
USA100,WT,CA-MHB,20ug/mL Naf
USA100,WT,RPMI + 10%LB
USA100,WT,RPMI + 10%LB,0.25ug/mL Naf
USA100,WT,RPMI + 10%LB,0.5ug/mL Naf
USA100,WT,RPMI + 10%LB,0ug/mL Naf
USA300 LAC,CA-MHB
USA300 LAC,CA-MHB,0.38 ug/mL Naf
USA300 LAC,RPMI + 10%LB
USA300 MRSA,dpurR
USA300 MRSA,WT
USA300 P23,Exponential
USA300 P23,Floxuridine,Exponential
USA300 P23,streptozotocin,Exponential
USA300 P23,WT,Exponential
USA300,0.0625ug/mL Naf
USA300,0.063 ug/mL Naf
USA300,0.1ug/mL Naf
USA300,0.5ug/mL Naf
USA300,0ug/mL Naf
USA300,1.0 ug/mLNaf
USA300,1.0ug/mL Naf
USA300,15ug/mL Naf
USA300,CA-MHB
USA300,CA-MHB,0.45ug/mL Van
USA300,CA-MHB,0.65ug/mL Van
USA300,CA-MHB,0.7ug/mL Van
USA300,CA-MHB,0.8ug/mL Van
USA300,CA-MHB,0ug/mL Van
USA300,delta agr::tet,DMSO
USA300,delta-mgrA::tet
USA300,DMSO
USA300,Exponential
USA300,RPMI + 10%LB
USA300,RPMI + 10%LB,0.031 ug/mL Naf
USA300,RPMI + 10%LB,0.063 ug/mL Naf
USA300,RPMI + 10%LB,0.1ug/mL Naf
USA300,RPMI + 10%LB,0.375ug/mL Van
USA300,RPMI + 10%LB,0.45ug/mL Van
USA300,RPMI + 10%LB,0.6ug/mL Van
USA300,RPMI + 10%LB,0.8ug/mL Van
USA300,RPMI + 10%LB,0ug/mL Naf
USA300,RPMI + 10%LB,0ug/mL Van
USA300,RPMI + 10%LB,15ug/mL Naf
USA300,Stationary
USA300,WT
USA300,WT,10 uM Linoleic Acid
USA300,WT,Apicidin
USA300,WT,DMSO
USA300,WT,Log
USA300,WT,RPMI + 10%LB
WT,Exponential
WT,L-exponential
WT,Mid-Log
WT,TSB,Exponential
WT,TSB,L-exponential
WT,TSB,Stationary
XN108,ccpA gene knock out
CPC51307 (cydC)
0.87 -0.09 1.65 0.85 -0.65 0.3 0.44 0.46 -0.02 -1.54 -0.8 -0.62 -1.16 0.39 -1.23 0.64 0.39 0.33 0.86 2.73 0.81 0.42 1.48 0.42 0.16 0.35 0.04 -1.05 -0.53 0.16 -1.53 -1.02 -1.33 -1.35 -1.24 -1.2 -0.14 -0.3 0.01 -0.7 -0.96 -0.59 -0.66 0.3 0.21 -0.4 1.2 0.36 -0.26 -1.16 -1.55 -0.06 -0.91 -1.0 -0.68 -0.71 -0.68 -0.74 -0.98 -1.41 -1.41 -1.27 -1.43 -0.68 0.1 0.53 0.87 0.04 -0.38 -0.2 -0.25 -0.21 -0.22 -0.4 -0.18 -0.27 -0.38 0.07 -0.2 0.42 0.04 -1.31 -0.74 0.07 0.05 -0.21 0.19 -0.9 -0.32 -0.44 0.11 -0.03
CPC51349 (cydD)
0.69 0.67 1.34 0.49 -0.95 0.66 -0.02 0.0 1.09 -0.91 -0.77 -0.88 -1.26 0.17 -1.13 0.92 0.56 0.59 0.94 2.63 1.02 0.69 1.6 0.14 -0.12 0.0 -0.12 -0.98 -0.57 0.0 -2.14 -1.15 -1.56 -1.58 -1.53 -1.44 -0.29 -0.55 -0.24 -0.92 -0.85 -0.41 -0.79 0.61 0.87 -0.06 0.99 0.34 0.21 -1.14 -1.46 -0.17 -1.07 -1.21 -0.65 -0.94 -0.86 -0.22 -1.04 -1.69 -1.6 -1.47 -1.6 -0.46 0.23 1.03 0.68 -0.12 -0.4 -0.37 -0.14 -0.44 -0.52 -0.52 -0.36 -0.11 -0.64 0.01 0.03 0.02 -0.38 -0.75 -0.15 0.25 -0.03 -0.48 -0.24 -0.03 -0.55 -0.45 -0.1 -0.17

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.