Heatmap: Cluster_39 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	55488,Cefotaxime	AH1263,WT,TSB	ATCC25923,DMSO	ATCC29213,Biofilm	ATCC6538,1/4MIC BITC	HG001,WT,L-exponential	IPLA1,NaPi	IPLA1,NaPi + LysH5	IPLA1,phage phiIPLA-RODI	MRSA BD02-25,WT	NCTC8325,RSH	NCTC8325,RSH,Mup	NCTC8325,WT	NCTC8325,WT,E-Log	NCTC8325,WT,Mup	Newman,Exponential	Newman,TSB	Newman,TSB + 1 mM MnCl2	Newman,WT	Newman,WT,Angeli's salt,Exponential	Newman,WT,Calprotectin,Exponential	Newman,WT,Exponential	Newman,WT,Na2S,Exponential	NRS384,WT	NRS384-rpoB-H481N-SCV	RN4220,WT,E-Log	RPMI + 10%LB,Exponential	TSB,Exponential	TSB,L-exponential	TSB,Stationary	UAMS1,WT	USA100,WT,CA-MHB	USA100,WT,CA-MHB,0.5ug/mL Naf	USA100,WT,CA-MHB,0ug/mL Naf	USA100,WT,CA-MHB,15ug/mL Naf	USA100,WT,CA-MHB,20ug/mL Naf	USA100,WT,RPMI + 10%LB	USA100,WT,RPMI + 10%LB,0.25ug/mL Naf	USA100,WT,RPMI + 10%LB,0.5ug/mL Naf	USA100,WT,RPMI + 10%LB,0ug/mL Naf	USA300 LAC,CA-MHB	USA300 LAC,CA-MHB,0.38 ug/mL Naf	USA300 LAC,RPMI + 10%LB	USA300 MRSA,dpurR	USA300 MRSA,WT	USA300 P23,Exponential	USA300 P23,Floxuridine,Exponential	USA300 P23,streptozotocin,Exponential	USA300 P23,WT,Exponential	USA300,0.0625ug/mL Naf	USA300,0.063 ug/mL Naf	USA300,0.1ug/mL Naf	USA300,0.5ug/mL Naf	USA300,0ug/mL Naf	USA300,1.0 ug/mLNaf	USA300,1.0ug/mL Naf	USA300,15ug/mL Naf	USA300,CA-MHB	USA300,CA-MHB,0.45ug/mL Van	USA300,CA-MHB,0.65ug/mL Van	USA300,CA-MHB,0.7ug/mL Van	USA300,CA-MHB,0.8ug/mL Van	USA300,CA-MHB,0ug/mL Van	USA300,delta agr::tet,DMSO	USA300,delta-mgrA::tet	USA300,DMSO	USA300,Exponential	USA300,RPMI + 10%LB	USA300,RPMI + 10%LB,0.031 ug/mL Naf	USA300,RPMI + 10%LB,0.063 ug/mL Naf	USA300,RPMI + 10%LB,0.1ug/mL Naf	USA300,RPMI + 10%LB,0.375ug/mL Van	USA300,RPMI + 10%LB,0.45ug/mL Van	USA300,RPMI + 10%LB,0.6ug/mL Van	USA300,RPMI + 10%LB,0.8ug/mL Van	USA300,RPMI + 10%LB,0ug/mL Naf	USA300,RPMI + 10%LB,0ug/mL Van	USA300,RPMI + 10%LB,15ug/mL Naf	USA300,Stationary	USA300,WT	USA300,WT,10 uM Linoleic Acid	USA300,WT,Apicidin	USA300,WT,DMSO	USA300,WT,Log	USA300,WT,RPMI + 10%LB	WT,Exponential	WT,L-exponential	WT,Mid-Log	WT,TSB,Exponential	WT,TSB,L-exponential	WT,TSB,Stationary	XN108,ccpA gene knock out
CPD29601 (ribH)	1.15	-1.24	-2.08	-0.89	-0.6	0.02	-0.88	-0.92	-2.91	-3.15	-1.6	-2.25	-1.41	1.1	-2.33	-2.15	-3.16	-2.91	-2.31	-1.83	-0.65	-1.8	-0.7	-0.52	0.1	1.94	-0.54	1.06	0.78	-2.62	-2.55	0.21	1.32	1.33	1.15	1.16	1.89	0.42	0.51	0.24	-0.89	-0.24	-1.51	-1.14	-0.87	-0.01	-0.7	-1.41	2.07	2.31	-2.08	0.55	0.83	0.66	-1.19	-1.7	-0.74	-1.21	0.35	-1.29	-1.36	-1.33	-0.67	-2.3	-0.79	-2.15	1.75	-0.09	0.14	0.49	0.43	-0.97	-0.72	-0.04	0.05	0.44	-0.49	0.63	0.65	-0.23	0.82	-2.4	-2.2	0.6	-2.39	-1.56	-2.59	-2.51	-0.08	1.55	-2.27	-1.52
CPD29641 (ribA)	1.05	-1.08	-2.52	-0.46	-1.03	-0.22	-0.4	-0.56	-2.5	-3.66	-1.58	-2.05	-1.57	1.04	-1.83	-2.29	-2.79	-2.59	-1.69	-1.82	0.38	-1.67	-0.54	-1.05	-0.29	2.08	-0.42	0.01	0.33	-3.05	-3.42	-0.2	1.02	0.94	0.89	0.9	1.63	0.06	0.12	-0.15	-1.93	-1.09	-2.36	-1.35	-1.26	0.03	-0.86	-2.0	2.44	2.18	-2.63	0.34	0.61	0.45	-1.37	-1.47	-1.0	-1.65	0.13	-1.79	-1.88	-2.01	-0.99	-2.65	-0.53	-0.31	2.98	-0.29	-0.14	0.2	0.41	-1.02	-0.82	-0.53	-0.59	0.29	-0.92	0.54	2.37	-0.45	0.66	-2.7	-2.56	0.35	-2.28	-1.72	-1.36	-0.75	-0.29	1.25	-2.6	-1.69
CPD29676 (ribB)	1.08	-0.99	-2.65	-0.26	-1.03	-0.64	-0.38	-0.5	-2.28	-3.38	-1.49	-1.95	-1.51	1.04	-1.92	-2.58	-3.06	-2.78	-1.79	-2.19	0.65	-1.66	-0.94	-1.24	-0.41	2.07	-0.42	-0.26	0.03	-3.21	-3.66	-0.18	1.0	0.97	0.97	1.0	1.7	0.1	0.23	-0.15	-1.82	-1.08	-2.45	-1.29	-1.34	0.19	-1.16	-2.14	2.68	2.36	-2.26	0.4	0.8	0.61	-1.45	-1.51	-0.98	-1.83	0.46	-1.89	-1.8	-1.92	-0.84	-2.49	-0.76	-0.9	2.69	-0.18	-0.03	0.29	0.52	-0.67	-0.56	-0.56	-0.63	0.49	-0.93	0.73	2.37	-0.86	0.05	-2.53	-2.43	0.28	-2.5	-1.9	-1.5	-1.04	-0.48	1.04	-2.99	-1.69
CPD29715 (ribD)	0.97	-0.63	-2.38	-1.2	-1.02	-1.1	-0.69	-0.76	-2.23	-2.67	-1.48	-2.24	-1.5	1.21	-1.8	-2.86	-2.8	-2.74	-1.7	-2.35	0.29	-1.5	-1.21	-1.54	-0.79	1.94	-0.69	0.82	-0.5	-2.77	-3.02	-0.3	0.96	0.89	0.87	0.9	1.58	0.24	0.36	0.02	-2.28	-1.41	-2.49	-0.94	-0.8	-0.1	-1.46	-2.37	2.1	2.33	-1.3	0.7	0.84	0.61	-0.93	-1.09	-0.67	-1.65	0.73	-1.26	-1.38	-1.59	-0.45	-2.18	-0.79	-2.83	2.77	0.01	0.15	0.52	0.85	-0.49	-0.43	-0.2	-0.23	0.72	-0.5	0.92	2.49	-0.98	-0.14	-1.89	-2.15	-0.08	-2.69	-1.44	-1.58	-0.63	-0.4	0.61	-2.36	-1.26

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.