Heatmap: Cluster_41 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
55488,Cefotaxime
AH1263,WT,TSB
ATCC25923,DMSO
ATCC29213,Biofilm
ATCC6538,1/4MIC BITC
HG001,WT,L-exponential
IPLA1,NaPi
IPLA1,NaPi + LysH5
IPLA1,phage phiIPLA-RODI
MRSA BD02-25,WT
NCTC8325,RSH
NCTC8325,RSH,Mup
NCTC8325,WT
NCTC8325,WT,E-Log
NCTC8325,WT,Mup
Newman,Exponential
Newman,TSB
Newman,TSB + 1 mM MnCl2
Newman,WT
Newman,WT,Angeli's salt,Exponential
Newman,WT,Calprotectin,Exponential
Newman,WT,Exponential
Newman,WT,Na2S,Exponential
NRS384,WT
NRS384-rpoB-H481N-SCV
RN4220,WT,E-Log
RPMI + 10%LB,Exponential
TSB,Exponential
TSB,L-exponential
TSB,Stationary
UAMS1,WT
USA100,WT,CA-MHB
USA100,WT,CA-MHB,0.5ug/mL Naf
USA100,WT,CA-MHB,0ug/mL Naf
USA100,WT,CA-MHB,15ug/mL Naf
USA100,WT,CA-MHB,20ug/mL Naf
USA100,WT,RPMI + 10%LB
USA100,WT,RPMI + 10%LB,0.25ug/mL Naf
USA100,WT,RPMI + 10%LB,0.5ug/mL Naf
USA100,WT,RPMI + 10%LB,0ug/mL Naf
USA300 LAC,CA-MHB
USA300 LAC,CA-MHB,0.38 ug/mL Naf
USA300 LAC,RPMI + 10%LB
USA300 MRSA,dpurR
USA300 MRSA,WT
USA300 P23,Exponential
USA300 P23,Floxuridine,Exponential
USA300 P23,streptozotocin,Exponential
USA300 P23,WT,Exponential
USA300,0.0625ug/mL Naf
USA300,0.063 ug/mL Naf
USA300,0.1ug/mL Naf
USA300,0.5ug/mL Naf
USA300,0ug/mL Naf
USA300,1.0 ug/mLNaf
USA300,1.0ug/mL Naf
USA300,15ug/mL Naf
USA300,CA-MHB
USA300,CA-MHB,0.45ug/mL Van
USA300,CA-MHB,0.65ug/mL Van
USA300,CA-MHB,0.7ug/mL Van
USA300,CA-MHB,0.8ug/mL Van
USA300,CA-MHB,0ug/mL Van
USA300,delta agr::tet,DMSO
USA300,delta-mgrA::tet
USA300,DMSO
USA300,Exponential
USA300,RPMI + 10%LB
USA300,RPMI + 10%LB,0.031 ug/mL Naf
USA300,RPMI + 10%LB,0.063 ug/mL Naf
USA300,RPMI + 10%LB,0.1ug/mL Naf
USA300,RPMI + 10%LB,0.375ug/mL Van
USA300,RPMI + 10%LB,0.45ug/mL Van
USA300,RPMI + 10%LB,0.6ug/mL Van
USA300,RPMI + 10%LB,0.8ug/mL Van
USA300,RPMI + 10%LB,0ug/mL Naf
USA300,RPMI + 10%LB,0ug/mL Van
USA300,RPMI + 10%LB,15ug/mL Naf
USA300,Stationary
USA300,WT
USA300,WT,10 uM Linoleic Acid
USA300,WT,Apicidin
USA300,WT,DMSO
USA300,WT,Log
USA300,WT,RPMI + 10%LB
WT,Exponential
WT,L-exponential
WT,Mid-Log
WT,TSB,Exponential
WT,TSB,L-exponential
WT,TSB,Stationary
XN108,ccpA gene knock out
CPC91484 (nupC_2)
-0.47 -1.35 -2.08 -1.46 4.4 0.35 -2.64 -2.9 -3.73 -1.97 -1.69 -1.02 -1.49 -1.43 -2.11 -1.06 -1.59 -1.58 -0.47 -0.78 -1.42 -0.41 -0.86 -1.65 -1.5 -1.7 -1.81 -1.76 -2.26 -1.97 -1.65 -1.63 -1.25 -1.35 -1.34 -1.34 -1.98 -1.99 -1.88 -1.91 0.12 0.11 -2.09 -0.35 -1.08 -0.0 0.1 -0.55 -0.54 0.71 0.66 -1.91 -0.32 -0.43 0.18 -0.43 -0.67 -1.61 0.25 -1.3 -1.68 -1.85 -0.38 2.4 -1.6 -2.34 -0.6 -1.91 -2.02 -1.95 -1.46 -2.47 -1.83 -2.0 -1.47 -1.72 -1.66 -1.58 -0.27 -0.77 -0.18 -0.71 -0.64 -2.1 -1.18 0.8 1.52 -2.91 -1.71 -2.33 -1.85 4.23
CPC91520 (psuG)
-1.06 -1.83 -2.54 -1.45 4.3 0.5 -2.45 -2.78 -1.83 -2.32 -1.87 -0.8 -1.35 -2.23 -1.71 -0.97 -1.31 -1.28 0.54 0.05 -1.77 -0.52 -0.68 -2.41 -2.13 -1.47 -2.08 -2.82 -2.65 -2.63 -2.31 -2.28 -2.14 -2.03 -1.97 -2.04 -2.7 -2.87 -2.53 -2.57 0.02 -0.2 -2.63 -0.86 -1.52 0.33 0.18 -0.8 0.35 0.41 0.19 -2.5 -0.44 -0.62 0.34 -0.18 -0.86 -2.25 0.15 -2.03 -2.19 -2.59 -1.35 2.58 -2.43 -1.53 0.06 -2.98 -3.11 -3.09 -2.68 -2.74 -2.66 -2.76 -3.65 -2.73 -2.79 -2.76 0.36 -0.45 0.28 -0.89 -0.9 -2.2 -1.46 1.27 1.51 -2.38 -1.77 -2.89 -2.5 4.45
CPC91555 (psuK)
-2.41 -2.08 -3.95 -1.96 4.2 0.18 -3.09 -2.61 -3.28 -1.71 -2.74 -1.26 -2.37 -2.63 -2.55 -0.25 -1.4 -1.92 0.69 -0.32 -2.17 -0.81 -0.46 -3.19 -2.91 -2.07 -3.29 -2.88 -2.76 -2.88 -2.37 -2.59 -2.32 -2.13 -2.04 -2.31 -2.72 -2.88 -2.45 -2.7 0.28 0.06 -2.78 -1.09 -1.43 0.8 -0.14 -0.59 1.07 0.75 0.65 -2.87 -0.26 -0.39 0.47 -0.03 -0.68 -2.31 0.46 -2.28 -2.56 -3.3 -1.12 2.21 -3.15 -1.89 0.21 -3.23 -3.36 -3.37 -2.55 -3.49 -3.09 -2.94 -2.85 -3.57 -2.73 -2.41 0.76 -0.61 0.48 -1.19 -1.43 -2.25 -1.6 1.2 0.33 -1.87 -2.62 -3.14 -2.64 4.68
CPC93138 (rbsU)
0.0 1.02 0.78 -1.69 3.02 0.5 -1.57 -3.36 -1.03 -1.83 -0.69 -0.76 -1.46 -0.86 -1.2 -0.78 0.32 0.33 -0.16 -0.48 -0.21 -0.72 -0.46 1.13 -0.02 -0.46 -0.44 -0.99 -0.68 -0.24 -2.29 -0.42 -0.12 0.27 0.41 0.38 -1.38 -1.43 -1.39 -1.26 -1.89 -1.88 -1.54 1.86 1.19 0.07 0.41 0.41 -0.1 -0.7 -0.5 -1.24 -1.06 -1.0 -0.5 -0.79 -1.06 -0.29 -0.56 -0.51 -0.24 -1.38 -1.16 0.32 -0.19 -0.85 -0.88 -0.44 -0.7 -0.85 -1.16 -1.39 -1.4 -2.06 -1.7 -1.2 -1.76 -0.98 -0.99 0.62 0.78 0.93 0.99 0.22 -1.07 0.11 -1.84 -0.36 -0.7 -0.88 -0.7 3.56
CPC93182 (rbsD)
-0.5 1.12 0.26 -1.4 2.43 0.25 -1.12 -2.48 -0.56 -0.62 -0.63 -0.71 -1.44 -0.9 -1.22 -0.09 0.96 0.84 -0.17 0.28 0.64 0.31 0.48 1.22 0.09 -0.57 0.05 -2.0 -1.02 -0.69 -3.86 -0.26 0.14 0.52 0.65 0.58 -0.84 -0.95 -0.92 -0.82 -1.53 -1.61 -1.36 1.2 0.36 -0.07 0.21 0.05 -0.13 -0.32 -0.25 -0.72 -0.65 -0.57 -0.1 -0.22 -0.64 -0.45 -0.14 -0.79 -0.32 -1.42 -1.15 0.3 -0.41 0.25 0.16 -0.36 -0.47 -0.58 -0.66 -1.06 -1.45 -1.66 -1.36 -0.64 -1.76 -0.51 -0.36 -0.16 -0.66 0.68 0.82 -0.42 -1.25 0.07 0.02 1.84 -0.68 -1.27 -0.91 2.89
CPC93250 (rbsK)
-0.13 0.72 0.72 -1.36 2.33 0.98 -1.25 -2.59 -0.77 -0.47 -0.71 -1.35 -1.36 -0.78 -1.16 -0.19 1.43 1.4 0.38 0.54 0.45 -0.01 0.35 1.02 -0.06 -0.63 0.12 -0.89 -1.08 -0.39 -2.36 -0.32 0.1 0.43 0.53 0.44 -0.93 -1.07 -0.98 -1.01 -1.9 -1.92 -1.38 1.1 0.31 -0.11 -0.11 0.05 0.34 -0.47 -0.5 -0.95 -0.97 -0.88 -0.64 -0.87 -1.02 -0.41 -0.46 -0.65 -0.38 -1.44 -1.13 0.23 -0.54 -0.53 0.23 -0.41 -0.58 -0.84 -0.74 -1.49 -1.21 -1.73 -1.51 -0.7 -1.85 -0.66 -0.04 -0.23 -0.07 0.63 0.67 -0.66 -1.46 0.34 0.73 1.56 -0.55 -1.11 -0.69 3.02

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.