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View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | 55488,Cefotaxime | AH1263,WT,TSB | ATCC25923,DMSO | ATCC29213,Biofilm | ATCC6538,1/4MIC BITC | HG001,WT,L-exponential | IPLA1,NaPi | IPLA1,NaPi + LysH5 | IPLA1,phage phiIPLA-RODI | MRSA BD02-25,WT | NCTC8325,RSH | NCTC8325,RSH,Mup | NCTC8325,WT | NCTC8325,WT,E-Log | NCTC8325,WT,Mup | Newman,Exponential | Newman,TSB | Newman,TSB + 1 mM MnCl2 | Newman,WT | Newman,WT,Angeli's salt,Exponential | Newman,WT,Calprotectin,Exponential | Newman,WT,Exponential | Newman,WT,Na2S,Exponential | NRS384,WT | NRS384-rpoB-H481N-SCV | RN4220,WT,E-Log | RPMI + 10%LB,Exponential | TSB,Exponential | TSB,L-exponential | TSB,Stationary | UAMS1,WT | USA100,WT,CA-MHB | USA100,WT,CA-MHB,0.5ug/mL Naf | USA100,WT,CA-MHB,0ug/mL Naf | USA100,WT,CA-MHB,15ug/mL Naf | USA100,WT,CA-MHB,20ug/mL Naf | USA100,WT,RPMI + 10%LB | USA100,WT,RPMI + 10%LB,0.25ug/mL Naf | USA100,WT,RPMI + 10%LB,0.5ug/mL Naf | USA100,WT,RPMI + 10%LB,0ug/mL Naf | USA300 LAC,CA-MHB | USA300 LAC,CA-MHB,0.38 ug/mL Naf | USA300 LAC,RPMI + 10%LB | USA300 MRSA,dpurR | USA300 MRSA,WT | USA300 P23,Exponential | USA300 P23,Floxuridine,Exponential | USA300 P23,streptozotocin,Exponential | USA300 P23,WT,Exponential | USA300,0.0625ug/mL Naf | USA300,0.063 ug/mL Naf | USA300,0.1ug/mL Naf | USA300,0.5ug/mL Naf | USA300,0ug/mL Naf | USA300,1.0 ug/mLNaf | USA300,1.0ug/mL Naf | USA300,15ug/mL Naf | USA300,CA-MHB | USA300,CA-MHB,0.45ug/mL Van | USA300,CA-MHB,0.65ug/mL Van | USA300,CA-MHB,0.7ug/mL Van | USA300,CA-MHB,0.8ug/mL Van | USA300,CA-MHB,0ug/mL Van | USA300,delta agr::tet,DMSO | USA300,delta-mgrA::tet | USA300,DMSO | USA300,Exponential | USA300,RPMI + 10%LB | USA300,RPMI + 10%LB,0.031 ug/mL Naf | USA300,RPMI + 10%LB,0.063 ug/mL Naf | USA300,RPMI + 10%LB,0.1ug/mL Naf | USA300,RPMI + 10%LB,0.375ug/mL Van | USA300,RPMI + 10%LB,0.45ug/mL Van | USA300,RPMI + 10%LB,0.6ug/mL Van | USA300,RPMI + 10%LB,0.8ug/mL Van | USA300,RPMI + 10%LB,0ug/mL Naf | USA300,RPMI + 10%LB,0ug/mL Van | USA300,RPMI + 10%LB,15ug/mL Naf | USA300,Stationary | USA300,WT | USA300,WT,10 uM Linoleic Acid | USA300,WT,Apicidin | USA300,WT,DMSO | USA300,WT,Log | USA300,WT,RPMI + 10%LB | WT,Exponential | WT,L-exponential | WT,Mid-Log | WT,TSB,Exponential | WT,TSB,L-exponential | WT,TSB,Stationary | XN108,ccpA gene knock out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CPC91484 (nupC_2) | -0.47 | -1.35 | -2.08 | -1.46 | 4.4 | 0.35 | -2.64 | -2.9 | -3.73 | -1.97 | -1.69 | -1.02 | -1.49 | -1.43 | -2.11 | -1.06 | -1.59 | -1.58 | -0.47 | -0.78 | -1.42 | -0.41 | -0.86 | -1.65 | -1.5 | -1.7 | -1.81 | -1.76 | -2.26 | -1.97 | -1.65 | -1.63 | -1.25 | -1.35 | -1.34 | -1.34 | -1.98 | -1.99 | -1.88 | -1.91 | 0.12 | 0.11 | -2.09 | -0.35 | -1.08 | -0.0 | 0.1 | -0.55 | -0.54 | 0.71 | 0.66 | -1.91 | -0.32 | -0.43 | 0.18 | -0.43 | -0.67 | -1.61 | 0.25 | -1.3 | -1.68 | -1.85 | -0.38 | 2.4 | -1.6 | -2.34 | -0.6 | -1.91 | -2.02 | -1.95 | -1.46 | -2.47 | -1.83 | -2.0 | -1.47 | -1.72 | -1.66 | -1.58 | -0.27 | -0.77 | -0.18 | -0.71 | -0.64 | -2.1 | -1.18 | 0.8 | 1.52 | -2.91 | -1.71 | -2.33 | -1.85 | 4.23 |
CPC91520 (psuG) | -1.06 | -1.83 | -2.54 | -1.45 | 4.3 | 0.5 | -2.45 | -2.78 | -1.83 | -2.32 | -1.87 | -0.8 | -1.35 | -2.23 | -1.71 | -0.97 | -1.31 | -1.28 | 0.54 | 0.05 | -1.77 | -0.52 | -0.68 | -2.41 | -2.13 | -1.47 | -2.08 | -2.82 | -2.65 | -2.63 | -2.31 | -2.28 | -2.14 | -2.03 | -1.97 | -2.04 | -2.7 | -2.87 | -2.53 | -2.57 | 0.02 | -0.2 | -2.63 | -0.86 | -1.52 | 0.33 | 0.18 | -0.8 | 0.35 | 0.41 | 0.19 | -2.5 | -0.44 | -0.62 | 0.34 | -0.18 | -0.86 | -2.25 | 0.15 | -2.03 | -2.19 | -2.59 | -1.35 | 2.58 | -2.43 | -1.53 | 0.06 | -2.98 | -3.11 | -3.09 | -2.68 | -2.74 | -2.66 | -2.76 | -3.65 | -2.73 | -2.79 | -2.76 | 0.36 | -0.45 | 0.28 | -0.89 | -0.9 | -2.2 | -1.46 | 1.27 | 1.51 | -2.38 | -1.77 | -2.89 | -2.5 | 4.45 |
CPC91555 (psuK) | -2.41 | -2.08 | -3.95 | -1.96 | 4.2 | 0.18 | -3.09 | -2.61 | -3.28 | -1.71 | -2.74 | -1.26 | -2.37 | -2.63 | -2.55 | -0.25 | -1.4 | -1.92 | 0.69 | -0.32 | -2.17 | -0.81 | -0.46 | -3.19 | -2.91 | -2.07 | -3.29 | -2.88 | -2.76 | -2.88 | -2.37 | -2.59 | -2.32 | -2.13 | -2.04 | -2.31 | -2.72 | -2.88 | -2.45 | -2.7 | 0.28 | 0.06 | -2.78 | -1.09 | -1.43 | 0.8 | -0.14 | -0.59 | 1.07 | 0.75 | 0.65 | -2.87 | -0.26 | -0.39 | 0.47 | -0.03 | -0.68 | -2.31 | 0.46 | -2.28 | -2.56 | -3.3 | -1.12 | 2.21 | -3.15 | -1.89 | 0.21 | -3.23 | -3.36 | -3.37 | -2.55 | -3.49 | -3.09 | -2.94 | -2.85 | -3.57 | -2.73 | -2.41 | 0.76 | -0.61 | 0.48 | -1.19 | -1.43 | -2.25 | -1.6 | 1.2 | 0.33 | -1.87 | -2.62 | -3.14 | -2.64 | 4.68 |
CPC93138 (rbsU) | 0.0 | 1.02 | 0.78 | -1.69 | 3.02 | 0.5 | -1.57 | -3.36 | -1.03 | -1.83 | -0.69 | -0.76 | -1.46 | -0.86 | -1.2 | -0.78 | 0.32 | 0.33 | -0.16 | -0.48 | -0.21 | -0.72 | -0.46 | 1.13 | -0.02 | -0.46 | -0.44 | -0.99 | -0.68 | -0.24 | -2.29 | -0.42 | -0.12 | 0.27 | 0.41 | 0.38 | -1.38 | -1.43 | -1.39 | -1.26 | -1.89 | -1.88 | -1.54 | 1.86 | 1.19 | 0.07 | 0.41 | 0.41 | -0.1 | -0.7 | -0.5 | -1.24 | -1.06 | -1.0 | -0.5 | -0.79 | -1.06 | -0.29 | -0.56 | -0.51 | -0.24 | -1.38 | -1.16 | 0.32 | -0.19 | -0.85 | -0.88 | -0.44 | -0.7 | -0.85 | -1.16 | -1.39 | -1.4 | -2.06 | -1.7 | -1.2 | -1.76 | -0.98 | -0.99 | 0.62 | 0.78 | 0.93 | 0.99 | 0.22 | -1.07 | 0.11 | -1.84 | -0.36 | -0.7 | -0.88 | -0.7 | 3.56 |
CPC93182 (rbsD) | -0.5 | 1.12 | 0.26 | -1.4 | 2.43 | 0.25 | -1.12 | -2.48 | -0.56 | -0.62 | -0.63 | -0.71 | -1.44 | -0.9 | -1.22 | -0.09 | 0.96 | 0.84 | -0.17 | 0.28 | 0.64 | 0.31 | 0.48 | 1.22 | 0.09 | -0.57 | 0.05 | -2.0 | -1.02 | -0.69 | -3.86 | -0.26 | 0.14 | 0.52 | 0.65 | 0.58 | -0.84 | -0.95 | -0.92 | -0.82 | -1.53 | -1.61 | -1.36 | 1.2 | 0.36 | -0.07 | 0.21 | 0.05 | -0.13 | -0.32 | -0.25 | -0.72 | -0.65 | -0.57 | -0.1 | -0.22 | -0.64 | -0.45 | -0.14 | -0.79 | -0.32 | -1.42 | -1.15 | 0.3 | -0.41 | 0.25 | 0.16 | -0.36 | -0.47 | -0.58 | -0.66 | -1.06 | -1.45 | -1.66 | -1.36 | -0.64 | -1.76 | -0.51 | -0.36 | -0.16 | -0.66 | 0.68 | 0.82 | -0.42 | -1.25 | 0.07 | 0.02 | 1.84 | -0.68 | -1.27 | -0.91 | 2.89 |
CPC93250 (rbsK) | -0.13 | 0.72 | 0.72 | -1.36 | 2.33 | 0.98 | -1.25 | -2.59 | -0.77 | -0.47 | -0.71 | -1.35 | -1.36 | -0.78 | -1.16 | -0.19 | 1.43 | 1.4 | 0.38 | 0.54 | 0.45 | -0.01 | 0.35 | 1.02 | -0.06 | -0.63 | 0.12 | -0.89 | -1.08 | -0.39 | -2.36 | -0.32 | 0.1 | 0.43 | 0.53 | 0.44 | -0.93 | -1.07 | -0.98 | -1.01 | -1.9 | -1.92 | -1.38 | 1.1 | 0.31 | -0.11 | -0.11 | 0.05 | 0.34 | -0.47 | -0.5 | -0.95 | -0.97 | -0.88 | -0.64 | -0.87 | -1.02 | -0.41 | -0.46 | -0.65 | -0.38 | -1.44 | -1.13 | 0.23 | -0.54 | -0.53 | 0.23 | -0.41 | -0.58 | -0.84 | -0.74 | -1.49 | -1.21 | -1.73 | -1.51 | -0.7 | -1.85 | -0.66 | -0.04 | -0.23 | -0.07 | 0.63 | 0.67 | -0.66 | -1.46 | 0.34 | 0.73 | 1.56 | -0.55 | -1.11 | -0.69 | 3.02 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.