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Heatmap: Cluster_30 (HCCA)

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Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92703 (OG1RF_10016)
 221.95 261.77 246.33 532.54 628.28 393.44 238.7 246.28 218.91 184.38 231.26 227.38 197.14 250.61 89.57 283.81 183.95 92.71 70.32 106.26 250.36 276.5 279.42 273.23 493.75 535.01 332.22 172.05 310.23 178.65 186.52 371.06 297.23 316.63 209.99 262.37 270.7 439.36 476.32 461.52 227.02 168.15 139.11 111.91
AEA92724 (proB)
 50.93 86.28 85.12 1.29 166.31 107.39 48.84 38.71 85.56 34.91 55.94 42.84 40.88 45.02 15.95 58.46 16.66 2.19 6.2 7.11 9.13 38.7 55.58 51.34 109.92 56.38 67.31 17.69 25.2 37.11 13.89 30.75 54.61 35.59 39.85 46.69 48.3 80.5 125.56 138.92 28.53 15.74 26.54 19.99
AEA92768 (hupB)
 69.95 16.3 21.85 429.26 737.44 643.75 34.05 9.29 10.72 0.0 0.0 9.22 0.0 0.0 146.81 49.98 0.0 0.0 12.42 1.72 48.1 971.22 1091.05 18.69 12.92 7.25 3.63 119.47 0.0 5.66 1.38 0.0 108.38 106.8 31.89 53.06 47.69 17.89 28.78 27.33 355.7 377.4 414.04 367.84
AEA92784 (OG1RF_10097)
 600.84 679.26 677.55 1417.22 1561.51 1679.19 271.98 252.57 313.82 247.7 373.95 281.48 373.31 292.41 844.95 665.05 187.01 109.09 208.64 171.85 93.04 257.03 221.14 147.51 136.81 120.59 139.01 164.14 267.27 240.22 197.31 193.18 516.95 130.12 204.83 150.5 113.46 389.61 406.13 398.32 1540.56 447.01 258.45 246.34
AEA92968 (OG1RF_10281)
 1058.28 1198.49 1075.95 23.43 1691.07 2160.04 994.12 942.22 441.42 1021.09 1174.47 897.39 897.72 953.81 706.89 2726.86 179.66 630.88 211.46 914.58 1215.49 688.84 742.38 314.32 1025.52 1918.35 2211.7 223.98 368.81 149.18 599.98 978.78 1687.32 369.81 146.63 199.1 295.55 429.28 680.03 650.43 1130.06 235.93 537.71 192.09
AEA93013 (dtpT)
 174.35 140.76 133.56 22.94 774.63 520.25 317.84 306.59 358.53 276.07 288.69 303.43 255.95 304.89 122.13 78.4 197.9 66.36 23.58 79.61 40.65 5.65 4.93 61.09 163.57 189.81 180.59 65.94 154.68 88.0 77.45 256.76 129.42 143.93 47.11 69.92 99.6 154.64 149.49 134.12 71.53 113.47 114.87 54.27
AEA93034 (OG1RF_10347)
 49.78 137.84 142.51 14.68 112.66 100.32 53.65 52.51 59.49 51.2 55.74 54.62 51.81 59.12 42.46 47.36 41.14 13.4 10.92 14.91 22.75 31.41 30.84 80.7 98.32 75.93 70.46 33.95 83.11 53.7 32.76 58.33 56.91 69.01 74.07 96.61 77.57 79.12 118.83 130.42 102.88 38.78 39.47 32.26
AEA93087 (OG1RF_10400)
 124.78 214.07 225.61 75.33 474.01 365.44 157.16 153.3 251.29 149.0 175.53 157.15 124.16 160.73 98.11 213.37 110.31 71.64 26.68 77.83 78.84 160.92 139.03 186.82 282.48 245.31 242.07 109.03 167.03 128.17 109.83 258.67 245.62 185.94 137.3 159.08 160.77 378.45 477.09 392.91 192.61 99.75 175.18 140.56
AEA93216 (OG1RF_10529)
 156.51 225.37 184.1 2.18 721.22 432.84 71.95 79.8 152.99 84.57 117.38 80.67 111.5 83.71 66.72 203.76 57.99 17.48 21.79 29.77 49.49 387.14 655.49 139.45 213.01 185.22 181.02 115.41 206.69 92.52 101.06 250.51 128.09 113.07 186.21 177.26 131.16 285.95 307.96 304.56 84.01 90.46 101.18 50.36
AEA93220 (lyzl6)
 195.08 209.44 214.54 115.86 261.99 342.63 129.88 112.13 92.98 181.02 149.87 112.97 162.97 122.16 158.75 734.94 78.95 76.55 42.09 96.81 130.7 242.31 247.78 197.25 305.23 204.53 465.09 147.4 181.87 207.97 213.01 264.52 413.38 108.17 77.34 75.45 92.08 178.67 315.19 271.87 304.39 85.98 166.65 80.41
AEA93329 (rpmI)
 40188.0 51824.1 50677.2 1284.6 53086.1 62871.6 5611.53 5553.37 4285.54 6349.2 8715.22 5566.41 12959.7 4693.32 7382.64 11494.3 14468.7 6809.46 1888.89 6682.63 13175.85 3520.66 5827.1 32981.5 25480.4 26880.6 34622.0 17952.36 4503.28 20078.77 4886.91 4605.69 5741.09 15031.45 19408.45 11042.85 13195.95 46647.95 52442.75 49728.05 12895.94 20432.87 16067.21 7627.25
AEA93358 (OG1RF_10671)
 296.75 665.15 577.6 21.39 935.96 1380.6 218.07 182.08 153.91 226.15 266.01 207.45 388.51 212.08 140.63 466.01 133.9 104.95 53.88 107.6 191.32 253.77 334.1 132.38 412.16 607.2 424.77 100.61 133.25 69.31 100.01 155.65 317.56 279.76 86.86 132.75 196.2 131.71 242.51 236.6 617.06 148.24 389.16 85.5
AEA93375 (OG1RF_10688)
 146.34 69.0 75.05 22.2 111.33 168.28 21.17 32.73 31.1 21.61 34.58 30.56 33.2 33.31 65.91 37.97 39.45 39.66 27.3 35.23 32.87 52.09 58.96 83.68 123.14 58.75 77.87 51.76 32.79 70.92 35.87 38.82 47.23 28.65 29.49 24.98 35.71 63.66 114.84 110.1 51.96 29.94 36.6 37.06
AEA93559 (OG1RF_10872)
 53.29 80.32 69.74 8.12 45.15 64.39 59.2 66.1 69.78 45.47 61.01 49.99 45.19 53.18 9.63 29.23 30.4 34.88 4.31 37.55 36.92 51.17 39.63 46.56 45.2 57.54 83.06 37.67 62.69 36.86 58.61 70.39 123.05 42.15 25.2 30.09 36.88 100.71 89.55 75.57 30.08 26.48 35.58 19.26
AEA93560 (OG1RF_10873)
 131.65 193.22 241.25 2.95 46.19 87.24 131.27 98.25 87.39 79.14 90.39 79.2 87.55 100.66 19.76 25.69 48.49 53.35 4.5 63.11 70.91 55.5 44.25 82.32 70.26 103.85 137.06 55.66 136.97 68.57 95.82 115.76 178.26 75.63 45.53 50.36 76.35 147.44 112.62 120.13 52.43 53.21 57.55 31.83
AEA93633 (murA)
 104.18 85.92 82.97 50.21 90.75 145.39 130.11 127.26 114.24 126.69 228.29 123.44 106.19 124.31 46.96 65.33 32.61 6.68 8.83 19.14 38.8 103.8 113.55 75.68 99.15 72.5 146.19 45.78 69.99 23.94 51.78 92.39 63.92 82.08 52.26 58.19 72.65 66.36 91.25 91.06 39.66 40.81 49.06 32.45
AEA93698 (OG1RF_11011)
 58.18 56.73 57.29 27.4 81.52 76.93 45.53 44.36 40.08 35.73 46.68 37.48 33.93 38.56 58.31 74.78 15.47 28.94 24.34 30.39 21.05 45.43 37.46 29.12 37.57 23.81 61.03 23.98 30.4 21.58 53.64 40.88 47.95 38.33 29.97 24.09 26.01 32.34 43.67 43.16 56.38 22.83 39.92 24.37
AEA93715 (OG1RF_11028)
 91.97 175.96 168.51 14.47 145.85 204.1 86.47 83.33 83.42 91.62 115.23 84.34 98.82 88.39 132.79 159.02 82.74 30.89 15.26 31.63 24.25 61.6 55.85 64.22 75.65 67.43 115.68 84.13 104.13 125.24 65.84 149.55 92.86 112.33 88.01 95.96 116.08 94.19 104.22 83.89 87.22 52.34 56.42 44.25
AEA93776 (OG1RF_11089)
 93.74 256.76 257.74 113.29 227.56 256.25 63.49 68.26 91.9 68.37 99.09 97.48 88.48 75.35 44.49 115.91 93.97 54.89 14.01 36.23 52.27 44.18 58.26 102.03 223.3 222.45 158.13 78.77 116.69 116.39 64.38 133.68 80.05 106.79 104.48 77.95 89.44 183.2 265.47 297.92 63.44 52.12 53.68 28.06
AEA93845 (OG1RF_11158)
 63.06 70.05 70.14 20.65 212.95 151.11 33.18 28.5 27.07 30.44 55.86 31.55 51.81 33.41 48.1 35.29 34.61 17.82 14.26 20.53 26.86 13.48 15.92 30.44 81.01 56.67 45.71 35.81 36.22 45.53 24.07 46.14 61.19 76.47 71.3 71.6 69.95 86.8 109.93 103.29 40.18 31.71 49.31 27.03
AEA93858 (OG1RF_11171)
 96.1 56.22 59.69 32.96 165.29 214.4 57.61 71.46 49.48 108.73 141.2 70.9 134.09 93.71 90.33 89.69 16.06 2.61 5.69 11.55 19.42 87.08 85.98 49.49 97.58 72.51 128.34 60.98 58.17 47.02 74.11 58.8 80.07 146.56 76.75 128.56 120.28 97.25 130.43 111.57 60.68 62.39 64.69 37.86
AEA93859 (OG1RF_11172)
 51.71 67.17 62.08 9.12 73.02 145.12 65.89 58.33 40.82 66.77 94.51 63.45 84.85 58.25 33.93 39.91 5.9 2.34 4.69 4.84 13.38 66.2 94.84 21.72 39.64 33.59 55.31 31.27 40.63 5.93 28.12 61.67 28.21 60.42 30.07 36.07 41.82 45.05 58.79 51.34 18.19 19.74 19.27 11.45
AEA93917 (sacT)
 137.86 52.6 41.92 11.03 275.54 435.64 258.67 261.5 115.55 223.04 343.56 248.51 342.43 251.82 9.68 36.51 10.75 2.48 17.94 7.73 184.17 316.43 340.11 51.64 50.09 28.37 231.71 32.52 94.56 30.63 115.22 107.73 19.02 97.5 47.75 61.25 82.11 50.27 92.35 69.55 8.45 25.51 31.59 12.23
AEA93932 (fur)
 912.72 1804.63 1905.68 77.04 1224.8 1741.58 489.74 471.78 672.26 581.18 785.68 499.58 566.5 528.43 286.3 464.64 223.62 130.16 134.06 196.65 321.73 294.08 335.64 575.49 796.01 483.05 497.6 325.57 776.41 727.44 294.64 651.87 1382.01 1270.67 759.49 679.36 760.26 1195.47 1800.62 1625.36 491.27 512.13 874.37 828.49
AEA93942 (OG1RF_11255)
 157.86 82.19 81.96 7.67 122.68 151.7 69.46 63.57 84.11 64.69 145.94 73.89 75.05 78.97 54.64 71.78 43.33 33.49 12.52 32.7 17.68 39.73 42.5 72.3 99.64 109.78 108.57 63.5 61.4 100.26 34.1 77.8 87.83 59.67 62.38 80.79 65.22 87.41 101.57 90.75 29.54 27.9 36.85 28.84
AEA93989 (amiD3)
 342.2 589.88 560.07 139.7 306.55 472.46 392.1 345.42 313.19 457.93 393.09 386.71 482.06 399.64 180.23 705.21 56.46 15.82 25.66 14.81 90.41 119.23 145.79 174.18 225.23 201.51 170.53 80.4 308.74 90.54 68.48 145.4 159.14 208.55 126.71 142.03 183.49 137.77 242.55 227.83 185.01 109.66 193.5 137.37
AEA94042 (plsY)
 114.75 201.51 241.18 16.26 230.97 213.39 157.49 143.92 76.53 169.09 258.66 148.6 216.0 163.94 57.82 218.41 41.43 5.08 11.61 8.51 25.15 57.69 64.5 58.42 133.79 143.81 186.32 55.99 172.06 66.16 44.71 149.43 68.06 109.31 55.72 74.04 90.11 91.47 128.42 122.77 44.59 33.84 58.4 28.55
AEA94063 (OG1RF_11376)
 54.74 82.04 76.85 11.4 49.86 49.41 21.31 22.1 17.45 25.24 33.08 22.85 24.55 19.7 5.51 17.31 42.41 15.33 5.65 6.8 46.75 6.96 6.81 33.85 71.81 43.27 25.52 18.73 48.91 39.65 14.85 32.92 21.59 26.27 22.62 26.75 24.39 45.49 71.42 76.11 35.46 21.21 35.64 24.28
AEA94340 (OG1RF_11653)
 72.43 134.47 129.58 25.77 93.41 164.54 48.83 42.06 38.12 61.8 106.16 54.9 110.18 44.81 23.17 40.15 12.4 1.94 10.75 7.85 16.58 51.34 63.72 27.3 70.52 36.84 28.47 22.2 58.61 14.26 11.71 49.2 27.45 69.33 43.57 53.32 58.55 49.63 102.08 123.71 35.13 16.9 39.73 41.97
AEA94428 (OG1RF_11741)
 113.69 169.62 187.83 16.01 60.44 159.98 179.61 188.09 140.13 162.34 147.91 152.76 134.14 185.03 77.33 110.29 48.1 8.99 9.07 5.19 16.96 40.49 59.53 112.65 137.7 90.6 160.35 78.08 67.77 69.48 49.61 62.19 99.98 198.54 84.07 122.37 132.85 126.47 198.03 162.89 55.64 50.76 56.84 48.24
AEA94443 (OG1RF_11756)
 42.91 62.95 54.4 0.61 35.11 78.24 24.56 23.61 22.59 28.39 54.62 21.32 45.64 25.19 8.03 15.83 6.82 1.42 5.93 7.02 14.82 56.38 67.8 27.78 36.15 31.33 28.78 14.77 13.79 9.38 7.91 18.35 11.14 35.27 24.86 25.41 29.67 37.17 53.17 51.69 14.56 13.68 21.02 12.55
AEA94882 (OG1RF_12195)
 395.95 867.03 928.93 233.27 1612.15 1649.26 731.14 624.92 841.77 496.25 644.41 688.03 615.66 719.59 374.93 400.04 340.52 124.56 148.5 94.03 88.63 1571.38 1651.79 333.45 367.05 534.51 222.52 642.91 362.64 197.28 71.87 202.94 524.67 754.0 526.92 737.36 783.19 329.19 433.04 432.38 511.83 493.89 360.16 267.3
AEA94901 (greA)
 559.2 876.39 895.96 187.34 742.24 839.05 687.92 654.13 1374.98 720.97 610.63 721.86 505.22 706.41 219.86 341.07 319.71 286.95 123.12 244.96 209.21 835.75 735.3 631.04 550.56 571.03 715.6 354.44 565.45 380.74 298.08 541.43 444.93 400.17 410.24 519.49 548.7 629.19 607.09 588.6 446.76 339.37 309.71 297.94
AEA94909 (OG1RF_12222)
 45.36 48.82 22.56 2.98 67.1 58.36 36.01 28.96 37.0 25.8 44.13 20.52 28.54 38.62 10.9 9.27 41.74 13.7 16.79 13.24 18.25 9.4 10.4 58.01 55.1 46.2 39.83 11.48 16.02 24.24 10.35 6.89 27.95 30.53 27.36 30.63 36.27 59.72 84.61 74.62 35.86 19.91 25.13 20.49
AEA94921 (thiI)
 85.89 95.19 91.57 8.0 117.15 128.68 89.6 96.84 75.31 97.51 121.33 82.6 124.11 82.44 33.77 92.65 48.6 15.77 11.52 29.31 19.26 65.31 66.53 52.08 101.09 98.72 121.45 51.01 71.0 43.33 42.21 108.12 74.54 78.95 48.46 70.73 72.18 75.13 86.53 84.48 57.86 41.3 50.94 34.74
AEA95025 (OG1RF_12338)
 56.51 43.25 35.7 8.91 270.97 264.18 70.13 63.01 63.35 51.83 70.02 46.02 78.67 61.26 11.2 39.51 29.0 3.86 5.48 3.99 35.28 154.44 149.71 88.54 85.42 82.29 84.84 60.27 44.68 16.39 30.74 50.94 80.12 64.58 37.52 34.75 46.42 87.08 119.32 127.81 24.97 30.06 18.72 9.14
AEA95026 (OG1RF_12339)
 209.06 404.55 405.68 27.33 1185.35 1096.07 319.2 298.9 243.67 231.09 225.89 292.72 238.8 353.87 131.19 435.67 279.37 21.04 13.81 24.23 57.07 230.91 186.22 183.4 402.83 883.21 366.61 188.85 210.88 96.64 99.85 306.12 467.19 337.04 154.65 251.35 262.37 276.52 253.8 247.75 362.51 233.55 208.81 161.9
AEA95048 (OG1RF_12361)
 75.27 180.33 166.95 1.95 153.84 138.17 140.91 130.08 150.11 119.15 156.19 107.55 88.81 121.55 20.22 66.21 42.94 25.56 20.87 62.56 15.01 50.27 46.8 92.5 92.64 71.99 106.47 51.31 97.35 50.03 77.36 107.21 145.28 75.85 55.87 58.08 80.26 83.49 110.42 91.09 34.39 58.89 57.65 45.32
AEA95058 (acpP2)
 1446.55 2348.47 2281.09 2545.99 5569.73 3973.96 2592.91 2187.26 3255.15 2615.58 2177.08 2844.49 2475.56 2653.16 1575.01 1160.82 1622.76 986.96 620.26 738.34 1184.56 6920.98 9225.89 849.84 939.39 1279.34 1294.07 1740.14 1770.76 762.03 1096.47 2217.53 2870.26 4495.84 4767.9 3904.34 5153.68 1080.7 1100.31 1181.97 1139.06 858.76 1047.14 772.97
AEA95079 (OG1RF_12392)
 181.66 175.66 182.58 167.54 361.02 259.01 131.08 121.85 114.73 144.13 151.89 130.82 113.86 124.5 116.81 260.06 103.47 71.15 135.5 111.66 60.6 152.7 115.08 154.65 161.41 169.39 144.16 104.46 148.47 117.55 107.9 205.11 144.37 107.97 103.68 94.66 99.39 157.99 149.61 132.46 223.75 115.64 109.25 87.73
AEA95114 (OG1RF_12427)
 93.64 28.0 0.0 1615.73 4065.61 1971.72 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.23 12.47 157.73 74.7 13.36 0.0 5.53 17.33 0.0 35.33 6.2 11.77 0.0 0.0 2.27 0.0 0.0 25.95 18.17 38.38 32.44 53.34 24.15 25.24 1303.2 366.49 421.75 278.85

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)