AAC75308 (yfaX, b2248)

Aliases : yfaX, b2248

Description : putative DNA-binding transcriptional regulator for the rhm operon [Ensembl]. IclR helix-turn-helix domain, Bacterial transcriptional regulator [Interproscan].

Gene families : OG_02_0003569 (OrthoFinder) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAC75308
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method	Actions
AAL21193	STM2292, yfaX	putative transcriptional regulator [Ensembl]. IclR...	0.1	OrthoFinder
AGT23348	N559_1601	putative regulator [Ensembl].	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
BP	GO:0016043	cellular component organization	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
CC	GO:0030288	outer membrane-bounded periplasmic space	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
CC	GO:0042597	periplasmic space	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment
BP	GO:0071840	cellular component organization or biogenesis	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR014757	Tscrpt_reg_IclR_C	122	247
IPR005471	Tscrpt_reg_IclR_N	9	58

External Links

UniProtKB	P77732

AAC75308 (yfaX, b2248)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation