AAC76546 (rcdB, b3521)

Aliases : rcdB, b3521

Description : LysR family putative transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAC76546
Cluster	HCCA: Cluster_3

Target	Alias	Description	ECC score	Gene Family Method
AAL22467	STM3607, yhjC	putative LysR family transcriptional regulator...	0.06	OrthoFinder
AGT22104	N559_0282	putative LysR-family transcriptional regulator...	0.02	OrthoFinder
AGT22715	N559_0927	LysR family transcriptional regulator protein [Ensembl]....	0.04	OrthoFinder
AGT24140	N559_2447	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT24929	N559_3271	putative LysR-family transcriptional regulator...	0.02	OrthoFinder
CRO36183	dmlR_11	D-malate degradation protein R [Ensembl]. LysR substrate...	0.08	OrthoFinder
CRP16170	dmlR_23	D-malate degradation protein R [Ensembl]. LysR substrate...	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0004518	nuclease activity	IEP	Enrichment
MF	GO:0004519	endonuclease activity	IEP	Enrichment
BP	GO:0006820	anion transport	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008509	anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	Enrichment
BP	GO:0015698	inorganic anion transport	IEP	Enrichment
BP	GO:0015700	arsenite transport	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	89	292
IPR000847	Tscrpt_reg_HTH_LysR	5	62

External Links

UniProtKB	P37641

AAC76546 (rcdB, b3521)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation