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  5. EDJ90052

EDJ90052 (CGSHi22421_05925)


Aliases : CGSHi22421_05925

Description : tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Ensembl]. Ribosomal protein S12/S23 [Interproscan].


Gene families : OG_02_0000684 (OrthoFinder) Phylogenetic Tree(s): OG0000684_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ90052
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AAC76367 rpsL, b3342 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal... 0.29 OrthoFinder
AAK99052 spr0248, rpsL 30S Ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.2 OrthoFinder
AAL22311 STM3448, rpsL 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal... 0.3 OrthoFinder
ADK87065 rpsL, MPNE_0257 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.04 OrthoFinder
AEA92831 rpsL, OG1RF_10144 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.18 OrthoFinder
AKI50591 rpsL, L2625_02801 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.11 OrthoFinder
AKP15118 rpsL, WX61_01064 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.11 OrthoFinder
CCG26288 No alias SSU ribosomal protein S12p (S23e) [Ensembl]. Ribosomal... 0.09 OrthoFinder
CCL20678 rpsL, BN171_90004 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.22 OrthoFinder
CCP43425 rpsL, Rv0682 30S ribosomal protein S12 RpsL [Ensembl]. Ribosomal... 0.12 OrthoFinder
CPC57151 rpsL, ERS093114_00833 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.22 OrthoFinder
CRO73605 rpsL 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.09 OrthoFinder
KNA49090 VCV51_033819 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009061 anaerobic respiration IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 13 123
No external refs found!