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EDJ90159 (greB, CGSHi22421_06002)


Aliases : greB, CGSHi22421_06002

Description : transcription elongation factor GreB [Ensembl]. HHH domain, S1 RNA binding domain, Helix-hairpin-helix motif, Tex protein YqgF-like domain, Tex-like protein N-terminal domain [Interproscan].


Gene families : OG_02_0001092 (OrthoFinder) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ90159
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AAL22366 STM3504, yhgF putative RNase R [Ensembl]. HHH domain, S1 RNA binding... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
MF GO:0008882 [glutamate-ammonia-ligase] adenylyltransferase activity IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR018974 Tex-like_N 10 194
IPR041692 HHH_9 561 630
IPR032639 Tex_YqgF 328 451
IPR003029 S1_domain 649 720
No external refs found!