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EDJ91372 (rplR, CGSHi22421_04693)


Aliases : rplR, CGSHi22421_04693

Description : 50S ribosomal protein L18 [Ensembl]. Ribosomal L18 of archaea [Interproscan].


Gene families : OG_02_0000945 (OrthoFinder) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91372
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AAC76329 rplR, b3304 50S ribosomal subunit protein L18 [Ensembl]. Ribosomal... 0.35 OrthoFinder
AAL22287 STM3424, rplR 50S ribosomal subunit protein L18 [Ensembl]. Ribosomal... 0.44 OrthoFinder
ADK86776 rplR, MPNE_0210 ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.26 OrthoFinder
AGT22258 N559_0450 50S ribosomal protein L18 [Ensembl]. 0.26 OrthoFinder
AHY40876 rplR, CJ8421_08520 50S ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.24 OrthoFinder
CBI65733 rplR, HPB8_176 large subunit ribosomal protein L18 [Ensembl]. Ribosomal... 0.19 OrthoFinder
CCP43464 rplR, Rv0720 50S ribosomal protein L18 RplR [Ensembl]. Ribosomal L18... 0.15 OrthoFinder
CPD14066 rplR, ERS093114_02138 50S ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.33 OrthoFinder
CRO74217 rplR hypothetical protein [Ensembl]. Ribosomal L18 of archaea... 0.25 OrthoFinder
KNA54988 VCV51_033171 ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.3 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 1 117
No external refs found!