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EDJ91592 (hfq, CGSHi22421_07472)


Aliases : hfq, CGSHi22421_07472

Description : RNA-binding protein Hfq [Ensembl]. ABC 3 transport family [Interproscan].


Gene families : OG_02_0000141 (OrthoFinder) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91592
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AAC74929 znuB, b1859 zinc ABC transporter permease [Ensembl]. ABC 3 transport... 0.01 OrthoFinder
AKP15480 mntB, WX61_01434 Manganese transport system membrane protein MntB... 0.03 OrthoFinder
CCG26737 SitD Manganese ABC transporter, inner membrane permease... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005887 integral component of plasma membrane IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP Enrichment
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006481 C-terminal protein methylation IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006885 regulation of pH IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Enrichment
MF GO:0015171 amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
MF GO:0015658 branched-chain amino acid transmembrane transporter activity IEP Enrichment
BP GO:0015803 branched-chain amino acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
BP GO:0018410 C-terminal protein amino acid modification IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0043687 post-translational protein modification IEP Enrichment
MF GO:0043772 acyl-phosphate glycerol-3-phosphate acyltransferase activity IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP Enrichment
BP GO:0055067 monovalent inorganic cation homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR001626 ABC_TroCD 1 257
No external refs found!