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CBI65673 (rlmN, HPB8_116)


Aliases : rlmN, HPB8_116

Description : Ribosomal RNA large subunit methyltransferase N [Ensembl]. Radical SAM superfamily, 4Fe-4S single cluster domain [Interproscan].


Gene families : OG_02_0000402 (OrthoFinder) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CBI65673
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AAC75570 rlmN, b2517 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37... 0.03 OrthoFinder
AAK99480 spr0676 Conserved hypothetical protein [Ensembl]. Radical SAM... 0.03 OrthoFinder
AAL21419 STM2525, yfgB putative Fe-S-cluster redox enzyme [Ensembl]. Radical... 0.04 OrthoFinder
AGT23166 N559_1408 ribosomal RNA large subunit methyltransferase N... 0.02 OrthoFinder
AHY40898 CJ8421_08630 ribosomal RNA large subunit methyltransferase N... 0.04 OrthoFinder
CCL19041 BN171_2830009 Putative radical SAM-family protein [Ensembl]. Radical... 0.05 OrthoFinder
CPC36540 rlmN, ERS093114_00206 Ribosomal RNA large subunit methyltransferase N... 0.03 OrthoFinder
CRO03401 rlmN_1 Dual-specificity RNA methyltransferase RlmN [Ensembl].... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 119 277
UniProtKB D7FBW6