AGT22061 (N559_0239)

Aliases : N559_0239

Description : putative transcriptional regulator [Ensembl]. Periplasmic binding proteins and sugar binding domain of LacI family, LacI-type HTH domain, Periplasmic binding protein/LacI sugar binding domain [InterProScan].

Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT22061
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AAC74402	ycjW, b1320	LacI family putative transcriptional repressor...	0.01	OrthoFinder
AAL00442	spr1639, ccpA	Catabolite control protein [Ensembl]. Bacterial...	0.03	OrthoFinder
AAL20352	STM1430, purR	transcriptional repressor for pur regulon, glyA, glnB,...	0.04	OrthoFinder
AAL21246	STM2345	putative transcriptional regulator [Ensembl]. Bacterial...	0.03	OrthoFinder
AAL21887	STM3011, galR	transcriptional repressor of galETK operon [Ensembl]....	0.03	OrthoFinder
AAL22744	STM3886, rbsR	transcriptional repressor for rbs operon (GalR/LacI...	0.03	OrthoFinder
AKI48007	L2625_00032	transcriptional regulator, LacI family [Ensembl]....	0.04	OrthoFinder
AKI48222	L2625_00274	transcriptional regulator [Ensembl]. LacI-type HTH...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Enrichment
MF	GO:0003908	methylated-DNA-[protein]-cysteine S-methyltransferase activity	IEP	Enrichment
BP	GO:0008610	lipid biosynthetic process	IEP	Enrichment
MF	GO:0008897	holo-[acyl-carrier-protein] synthase activity	IEP	Enrichment
BP	GO:0009254	peptidoglycan turnover	IEP	Enrichment
BP	GO:0015939	pantothenate metabolic process	IEP	Enrichment
BP	GO:0015940	pantothenate biosynthetic process	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
MF	GO:0030599	pectinesterase activity	IEP	Enrichment
BP	GO:0032506	cytokinetic process	IEP	Enrichment
BP	GO:0042545	cell wall modification	IEP	Enrichment
BP	GO:0090529	cell septum assembly	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000843	HTH_LacI	8	54
IPR001761	Peripla_BP/Lac1_sug-bd_dom	67	316

External Links

No external refs found!

AGT22061 (N559_0239)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation