AGT22061 (N559_0239)

Aliases : N559_0239

Description : putative transcriptional regulator [Ensembl]. Periplasmic binding proteins and sugar binding domain of LacI family, LacI-type HTH domain, Periplasmic binding protein/LacI sugar binding domain [InterProScan].

Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT22061
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AAC74402 ycjW, b1320 LacI family putative transcriptional repressor... 0.01 OrthoFinder
AAL00442 spr1639, ccpA Catabolite control protein [Ensembl]. Bacterial... 0.03 OrthoFinder
AAL20352 STM1430, purR transcriptional repressor for pur regulon, glyA, glnB,... 0.04 OrthoFinder
AAL21246 STM2345 putative transcriptional regulator [Ensembl]. Bacterial... 0.03 OrthoFinder
AAL21887 STM3011, galR transcriptional repressor of galETK operon [Ensembl].... 0.03 OrthoFinder
AAL22744 STM3886, rbsR transcriptional repressor for rbs operon (GalR/LacI... 0.03 OrthoFinder
AKI48007 L2625_00032 transcriptional regulator, LacI family [Ensembl].... 0.04 OrthoFinder
AKI48222 L2625_00274 transcriptional regulator [Ensembl]. LacI-type HTH... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030599 pectinesterase activity IEP Enrichment
BP GO:0032506 cytokinetic process IEP Enrichment
BP GO:0042545 cell wall modification IEP Enrichment
BP GO:0090529 cell septum assembly IEP Enrichment
InterPro domains Description Start Stop
IPR000843 HTH_LacI 8 54
IPR001761 Peripla_BP/Lac1_sug-bd_dom 67 316
No external refs found!