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AGT22462 (N559_0666)


Aliases : N559_0666

Description : putative transport system permease component [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT22462
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AAC74587 lsrC, b1514 autoinducer 2 import system permease protein [Ensembl].... 0.19 OrthoFinder
AAC74588 lsrD, b1515 autoinducer 2 import system permease protein [Ensembl].... 0.16 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.11 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.12 OrthoFinder
AAL22915 STM4075, ydeY putative sugar transport protein [Ensembl].... 0.07 OrthoFinder
AAL22916 STM4076, ydeZ putative sugar transport protein [Ensembl].... 0.07 OrthoFinder
AAT48138 araH, b4460 L-arabinose ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AGT26146 N559_4543 ribose high-affinity ABC transporter permease component... 0.06 OrthoFinder
AGT26649 N559_5072 rhamnose ABC transport system permease component [Ensembl]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
BP GO:0009268 response to pH IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
BP GO:0010447 response to acidic pH IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0071214 cellular response to abiotic stimulus IEP Enrichment
BP GO:0071467 cellular response to pH IEP Enrichment
BP GO:0071468 cellular response to acidic pH IEP Enrichment
BP GO:0104004 cellular response to environmental stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 35 305
No external refs found!