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  5. AGT22732

AGT22732 (N559_0945, FimD)


Aliases : N559_0945, FimD

Description : outer membrane usher protein FimD [Ensembl]. PapC C-terminal domain, PapC N-terminal domain [InterProScan].


Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT22732
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AAC77273 fimD, b4317 fimbrial usher outer membrane porin protein; FimCD... 0.4 OrthoFinder
AAL19500 STM0546, fimD outer membrane usher protein [Ensembl]. PapC N-terminal... 0.05 OrthoFinder
AGT23014 N559_1250 outer membrane protein; export and assembly of type 1... 0.04 OrthoFinder
AGT24313 N559_2637 fimbrial usher protein [Ensembl]. PapC N-terminal... 0.02 OrthoFinder
AGT25491 N559_3855 fimbrial usher protein [Ensembl]. PapC N-terminal... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0009297 pilus assembly IEA Interproscan
MF GO:0015473 fimbrial usher porin activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007155 cell adhesion IEP Enrichment
CC GO:0009289 pilus IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
InterPro domains Description Start Stop
IPR025949 PapC-like_C 791 855
IPR025885 PapC_N 40 184
IPR000015 Fimb_usher 200 782
No external refs found!