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  5. AGT23444

AGT23444 (N559_1702)


Aliases : N559_1702

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].


Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT23444
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAC73986 ycaN, b0900 LysR family putative transcriptional regulator... 0.03 OrthoFinder
AAC76096 ttdR, b3060 transcriptional activator of ttdABT [Ensembl]. LysR... 0.03 OrthoFinder
AAL22236 STM3367, yhcS putative LysR family transcriptional regulator... 0.03 OrthoFinder
AGT24266 N559_2588 LysR substrate binding domain protein [Ensembl]. LysR... 0.04 OrthoFinder
AGT24894 N559_3234 LysR family transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AKP14845 dmlR_2, WX61_00778 HTH-type transcriptional regulator DmlR [Ensembl]. LysR... 0.03 OrthoFinder
CRN98458 dmlR_4 D-malate degradation protein R [Ensembl]. LysR substrate... 0.03 OrthoFinder
CRO10861 dmlR_7 D-malate degradation protein R [Ensembl]. LysR substrate... 0.02 OrthoFinder
CRP22590 dmlR_24 D-malate degradation protein R [Ensembl]. LysR substrate... 0.03 OrthoFinder
CRP61961 dmlR_32 D-malate degradation protein R [Ensembl]. LysR substrate... 0.01 OrthoFinder
CRP68785 dmlR_33 D-malate degradation protein R [Ensembl]. LysR substrate... 0.03 OrthoFinder
KNA55708 VCV51_031016 LysR substrate binding domain-containing protein... 0.03 OrthoFinder
KNA59372 VCV51_031318 LysR substrate binding domain-containing protein... 0.05 OrthoFinder
KNA59855 VCV51_032266 LysR substrate binding domain-containing protein... 0.04 OrthoFinder
KNA59999 VCV51_032411 LysR substrate binding domain-containing protein... 0.03 OrthoFinder
KNA60706 VCV51_032145 LysR substrate binding domain-containing protein... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Enrichment
MF GO:0004016 adenylate cyclase activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006171 cAMP biosynthetic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006749 glutathione metabolic process IEP Enrichment
BP GO:0006751 glutathione catabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Enrichment
MF GO:0008852 exodeoxyribonuclease I activity IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042219 cellular modified amino acid catabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043171 peptide catabolic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044273 sulfur compound catabolic process IEP Enrichment
BP GO:0046058 cAMP metabolic process IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0052652 cyclic purine nucleotide metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 4 63
IPR005119 LysR_subst-bd 88 294
No external refs found!